PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_117940_xddf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 61aa    MW: 6858.89 Da    PI: 9.3573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_117940_xddf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-091444131
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                        +g W++eEde+l++ ++++G g+W+++++  
  Bv5_117940_xddf.t1 14 KGLWSPEEDEKLYNHITRFGVGCWSSVPKLA 44
                        678************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-14643IPR009057Homeodomain-like
SuperFamilySSF466898.61E-9845IPR009057Homeodomain-like
PROSITE profilePS5129410.46961IPR017930Myb domain
PfamPF002496.4E-71443IPR001005SANT/Myb domain
CDDcd001679.52E-61742No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRHSCCAKQ KLKKGLWSPE EDEKLYNHIT RFGVGCWSSV PKLADLLLPP PSQSNRATNA  60
Y
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021762853.12e-25transcription factor MYB86-like
SwissprotQ8LPH65e-21MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A1Q3B3735e-23A0A1Q3B373_CEPFO; Myb_DNA-binding domain-containing protein
TrEMBLA0A427AQK44e-23A0A427AQK4_ENSVE; Uncharacterized protein
STRINGXP_010678849.11e-24(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-23myb domain protein 86