PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_118870_qyzg.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 219aa MW: 25224.8 Da PI: 10.312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_118870_qyzg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.8	5.1e-30	50	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+++ ++s r+g +++r++vC+k+g+r+ + k+ +++rr+ra+tr gCka+++vkk+k+gkw+vt+l+ eH+H+l+ Bv5_118870_qyzg.t1 50 FYDTYATRVGFIIRVDAFRRSMRDGAVVWRRLVCNKQGFRRVKPKQ-NETRRSRAVTREGCKAMIMVKKQKSGKWVVTRLVREHSHPLV 137 9****************************************999.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-28	50	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAVGDLPIGD EDVEMMERSN GKKLQTIEAN SAVEPYEGME FESEEAAKIF YDTYATRVGF 60 IIRVDAFRRS MRDGAVVWRR LVCNKQGFRR VKPKQNETRR SRAVTREGCK AMIMVKKQKS 120 GKWVVTRLVR EHSHPLVNSP TNSRRSALPS HTADEKDAKI RELTAELQRE RRRSAVLQEK 180 LNIVLKDMEE HSNHLARNVE NIIQKVKDAE PNNKSLSYS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678987.1	1e-162	PREDICTED: protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2I4EFQ2	1e-104	A0A2I4EFQ2_JUGRE; protein FAR1-RELATED SEQUENCE 7
STRING	XP_010678986.1	1e-160	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-89	FAR1 family protein