PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_120720_czkq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 503aa    MW: 55659.8 Da    PI: 6.0843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_120720_czkq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13357404355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h  +Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Bv5_120720_czkq.t1 357 MSHVLAERQRREKLNQRFYALRAVVPNiS------KMDKASLLLDAISYINDLQ 404
                         68999**********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-4548231IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.62E-18353418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.072354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-14357407No hitNo description
PfamPF000101.8E-10357404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18358419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-16360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGHDSLLKDE DKVMVEAVVG KDAYNFLMST ACDDSLSEFN PPGDILNLQQ GLCQIVDGSS  60
WNYAIFWQIA SSKNGKAVLI WGDGHCRDPK AVVAREGLDG GNGKFGEVKN EGKKRVLEKL  120
HGCFGGSEED NFAATLDKVS DVEMLYLTSM YYWFRLDSSL GPAKSFTSGR SIWVSDVRSC  180
LDHYQSRAHL AKSAMFQTVV FVPVKTGVLE LGSVRTVMEE HSLVQMVKKI FGESQSFPAK  240
VSPKVFGRDL SLVTSRPRSM NISFAPKTED DASFSAESRV GASDIGAKHI YGSSSNGKHS  300
EQSDKRVFSE INFGGSNPES DFPALDEASE ELLLQAAELR ARKRPSRRPA SGREEAMSHV  360
LAERQRREKL NQRFYALRAV VPNISKMDKA SLLLDAISYI NDLQTKIGEL EAEKEVANPK  420
DESFEIPEID FQARQDDALV HVSFPLDAHP VSKVVKTLRE HQLVALEANV STKDDKMVHT  480
FTIRAQSDGA ENLKEKLEAA LSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-25352414264Transcription factor MYC2
5gnj_B4e-25352414264Transcription factor MYC2
5gnj_E4e-25352414264Transcription factor MYC2
5gnj_F4e-25352414264Transcription factor MYC2
5gnj_G4e-25352414264Transcription factor MYC2
5gnj_I4e-25352414264Transcription factor MYC2
5gnj_M4e-25352414264Transcription factor MYC2
5gnj_N4e-25352414264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679204.20.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2161e-168MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A0K9Q7E40.0A0A0K9Q7E4_SPIOL; Uncharacterized protein
STRINGXP_010679204.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-139bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]