PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_120730_wjao.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 509aa    MW: 56139.7 Da    PI: 6.5135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_120730_wjao.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-13364410455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Bv5_120730_wjao.t1 364 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 410
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4349238IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-14363414No hitNo description
SuperFamilySSF474592.49E-19363430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-19364427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10364410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-15366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MGVNCEFKEE DKAMLESVVG VEACKLLISR GCEGFLSDFK PTNSMLNRQQ GLCQIVDSSN  60
WNYAILWQIV SSKKDGRSVL IWGDGHCRHP NAVVAGERGD GGEDELVEGN GEISKKDEAK  120
KRVLEKLHAC FGGSEGGNFA ATLDKVSDIE MLYLTSMYYW FWLDSAMGPA KCFTSGRPIW  180
VSDGEACLDY YQSRAQLARS ANFRTVVFVP VQTGVLELGS IRMVLEEPNL VQMVKHIFGE  240
PRSLQAKAFP KIFGCELSLS GSKPQSTNLN FTPKLEDDAA FSAESHVGGS NVGGKHTFGS  300
SSNGCCSDDS GKKLVSEINF GGLNPETQNP GLEQAKEELI LQASQPKPRK RGRKPANGRE  360
EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAISYITDLQ MKVKMLEAEK  420
EMANPNHKHM AIPEIDFQAR QDDALLHVSF PLDLHPASTV VRTLRDNQVM APEANVSTTD  480
NKIIHTFTIR TQSGGAENLK EKLQAALSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28358420264Transcription factor MYC2
5gnj_B1e-28358420264Transcription factor MYC2
5gnj_E1e-28358420264Transcription factor MYC2
5gnj_F1e-28358420264Transcription factor MYC2
5gnj_G1e-28358420264Transcription factor MYC2
5gnj_I1e-28358420264Transcription factor MYC2
5gnj_M1e-28358420264Transcription factor MYC2
5gnj_N1e-28358420264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679205.10.0PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2161e-162MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A0K9Q9G30.0A0A0K9Q9G3_SPIOL; Uncharacterized protein
STRINGXP_010679205.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-154bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]