PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_121050_fnik.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 134aa    MW: 15130.4 Da    PI: 6.5243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_121050_fnik.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.51.2e-211566256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +g+++AeIrdp+ ng  +r +lg+++taeeAa+a+++a+ +l+g+
  Bv5_121050_fnik.t1 15 KYRGVRRRP-WGKFAAEIRDPKRNG--ARLWLGTYDTAEEAARAYDRAAFALRGH 66
                        8********.**********98776..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-371579IPR001471AP2/ERF domain
PfamPF008475.4E-161566IPR001471AP2/ERF domain
PROSITE profilePS5103224.9611573IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-241574IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-321574IPR001471AP2/ERF domain
PRINTSPR003671.7E-111627IPR001471AP2/ERF domain
CDDcd000184.17E-311674No hitNo description
PRINTSPR003671.7E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEGDNNNKGS SSSNKYRGVR RRPWGKFAAE IRDPKRNGAR LWLGTYDTAE EAARAYDRAA  60
FALRGHLAIL NFPNEQHYHS SDVSSNNVLG RGSRGGNSSS SSLSREHQVD QREIIEFEYV  120
DDNVLEELLD TQKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-3241242114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679244.17e-95PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC54e-46ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0K9RQS14e-48A0A0K9RQS1_SPIOL; Uncharacterized protein
STRINGXP_010679244.13e-94(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-33ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]