PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_121620_pazn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 612aa    MW: 70493 Da    PI: 8.805
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_121620_pazn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.8e-11387698
                        ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                        +ps+ +k+  l++pk+fa +  ++  +    +l+ ++g++ +v+l      ++ ++++GW+eFv+   +    f+vFk++g+s+f  +v++f+
  Bv5_121620_pazn.t1  3 SPSSQFKK--LRIPKNFAGKLRNE-DC-NVAILNVPTGETRKVEL--VEEENELWFGNGWQEFVEYFSIGFAYFLVFKYEGNSNF--LVHIFN 87
                        45555655..9*******888533.34.4667777**********..999999****************************9999..999986 PP
2B3521.3e-16189281193
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                         ff + ++++vl++g l +p +f ++h   +++  e k ++le  +gr+Wev++  + ++  + +++GW  F++  gL++gD++ F+l++  
  Bv5_121620_pazn.t1 189 FFVADMKPYVLNKGFLNIPLHFGRRHlrcKLN--ECKLVKLEAYDGRQWEVNCFLDYRK--MAFRQGWMMFARHIGLEAGDICAFELINAk 275
                         788899*********************88777..6679***************555554..5699**********************9875 PP

                         SEE..E CS
                  B3  88 sefelv 93 
                         ++++ +
  Bv5_121620_pazn.t1 276 KTKKST 281
                         555544 PP
3B331.82.5e-10337426298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk  +++ + +++ l++p +fa+ +++  e s+t +l+ ++g++ ev+l   k +++ ++ +GW+eF +   +    f++F +dg+s+f  
  Bv5_121620_pazn.t1 337 FKLILTPISQSKK-LRIPDNFARIYSN--ELSTTSILKVPTGETQEVTL--LKEDNQLWFHNGWQEFMEYYSISYAFFLLFNYDGNSKF-- 420
                         5555555555554.********88864..48999***************..**********************************9999.. PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                          v +f+
  Bv5_121620_pazn.t1 421 SVLIFN 426
                         888876 PP
4B348.12.1e-15503600198
                         EEEE-..-HHHHTT-.EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgr.lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         ff + ++s++l +g+ l ++  f+++h   +g+ ++   ++le  +gr+W+v++   k++ r+++++GW  F+++ gL++gD++vF++++ 
  Bv5_121620_pazn.t1 503 FFVTDIKSYALDTGLyLNVSLAFVRDHlgcKGDVTK--SVKLEAYDGRQWKVRC--IKGQYRCTFGSGWIIFAREVGLEVGDICVFERTRA 589
                         666777777777763146778899999*98555445..6***************..89999999***********************8877 PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                         +e  l+v++ +
  Bv5_121620_pazn.t1 590 EECLLKVHIAK 600
                         54447777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.0E-5189IPR003340B3 DNA binding domain
PROSITE profilePS5086310.518189IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-15291IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-6287No hitNo description
PfamPF023627.2E-9487IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-14996IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-17184276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16185277IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-15188275No hitNo description
PfamPF023622.5E-14189281IPR003340B3 DNA binding domain
SMARTSM010195.5E-10189291IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308189288IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-18334430IPR015300DNA-binding pseudobarrel domain
CDDcd100173.40E-10334426No hitNo description
SuperFamilySSF1019361.92E-17335430IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.151335428IPR003340B3 DNA binding domain
PfamPF023621.2E-7336426IPR003340B3 DNA binding domain
SMARTSM010192.1E-9336428IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-17497601IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-16499605IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-13503601IPR003340B3 DNA binding domain
CDDcd100171.08E-14503598No hitNo description
SMARTSM010196.8E-8503602IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025504602IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MLSPSSQFKK LRIPKNFAGK LRNEDCNVAI LNVPTGETRK VELVEEENEL WFGNGWQEFV  60
EYFSIGFAYF LVFKYEGNSN FLVHIFNLTA CEITYPCNAS NNVSKVRHEP CVKGNEYDKE  120
EKPEISQKKS DVEVQQLDSE DDQYISDNEE VFNARKGVRP VGNPLWFKKH EELLKVAIAA  180
GISMPKNPFF VADMKPYVLN KGFLNIPLHF GRRHLRCKLN ECKLVKLEAY DGRQWEVNCF  240
LDYRKMAFRQ GWMMFARHIG LEAGDICAFE LINAKKTKKS TIIVVSKKRK SKHTFITFTP  300
ITYILYMKKS SMNPKTNKEE EKIIHRNYGV IKPRSFFKLI LTPISQSKKL RIPDNFARIY  360
SNELSTTSIL KVPTGETQEV TLLKEDNQLW FHNGWQEFME YYSISYAFFL LFNYDGNSKF  420
SVLIFNPTAC EISYQRNPSN SISKEQCEIC PEKMNGDNEE ITSDTKEDTL FGHGYSMSRA  480
SKNYEALMKD VVAAGISRPK RPFFVTDIKS YALDTGLYLN VSLAFVRDHL GCKGDVTKSV  540
KLEAYDGRQW KVRCIKGQYR CTFGSGWIIF AREVGLEVGD ICVFERTRAE ECLLKVHIAK  600
KSQINAASIS SA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679360.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0K9S4436e-91A0A0K9S443_SPIOL; Uncharacterized protein
STRINGXP_010679360.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-31B3 family protein