PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_121880_touz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 255aa    MW: 29270.3 Da    PI: 9.2041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_121880_touz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-2956114259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D y+WrKYGqK vkgs++p++YYrC+++ gC +kk+ver++ed ++++itY + Hnh+
  Bv5_121880_touz.t1  56 SDSYSWRKYGQKLVKGSPYPKGYYRCSTSkGCLAKKQVERCKEDASILIITYFSAHNHP 114
                         69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-3048115IPR003657WRKY domain
SuperFamilySSF1182905.62E-2652115IPR003657WRKY domain
SMARTSM007742.2E-3555115IPR003657WRKY domain
PROSITE profilePS5081128.54156116IPR003657WRKY domain
PfamPF031061.1E-2457114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MNDASTSTSP KIWKDNSISR NQASNKRKMQ DEKKVVTIKI EAEKGDSQLK KNGPPSDSYS  60
WRKYGQKLVK GSPYPKGYYR CSTSKGCLAK KQVERCKEDA SILIITYFSA HNHPTQSPQS  120
PTSTQTHKAP KKKAQFQAQV NEAHSRPKQE QPSNDNKGNN VENTPNDQGQ QGHFHYIQSP  180
TYCSNDTTKM EKQHEEKPYV VSFDNITPFD SQNNFDVVDD QYLQQNNDFF DELNELDFIR  240
NNNVFDQKKF KTSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-17571131671WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679393.10.0PREDICTED: probable WRKY transcription factor 69
STRINGXP_010679393.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.24e-31WRKY DNA-binding protein 69