PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_122120_oezy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 225aa    MW: 25140 Da    PI: 8.7028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_122120_oezy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-1050102255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                         +  hn+ E+ RR ++N+ +   r+llP +   ++kK  s   i  +A +YI +Lq
  Bv5_122120_oezy.t1  50 KLDHNAKEKVRRMKLNETYLAFRSLLPDS--KRAKKrWSAPYIIDRALDYIPQLQ 102
                         678*************************6..377777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-1340112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1048106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.57948101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-549106No hitNo description
PfamPF000103.0E-750102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MQYYCPTTTT TTTTIAVAAS AATMMINDQA APPPGVCRGG GGGEGSSSKK LDHNAKEKVR  60
RMKLNETYLA FRSLLPDSKR AKKRWSAPYI IDRALDYIPQ LQAEIEKLTL EKKNMLTMLE  120
KKQQLVERSK DHNNATEDKK TLTVSMNEVK IGEVIVQICE QNNKIGMLPT LIEKLEGESM  180
QIVGASSQRA CEDRSCFHIH VQMGENPVEA DYVAILHKKI ISWLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019105369.11e-166PREDICTED: uncharacterized protein LOC104894793 isoform X2
TrEMBLA0A0K9RLF11e-102A0A0K9RLF1_SPIOL; Uncharacterized protein
STRINGXP_010679419.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.12e-26bHLH family protein