PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_123490_aaar.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 641aa    MW: 73777.8 Da    PI: 4.7239
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_123490_aaar.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05612632222
                         EETTTTEEESSHHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                         +C++Cg+ F ++s L++H++ 
  Bv5_123490_aaar.t1 612 VCEKCGEEFESRSKLHKHLSE 632
                         6*****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.3E-22476IPR001623DnaJ domain
SuperFamilySSF465653.93E-224101IPR001623DnaJ domain
SMARTSM002711.9E-21769IPR001623DnaJ domain
PROSITE profilePS5007618.669877IPR001623DnaJ domain
CDDcd062577.28E-16866IPR001623DnaJ domain
PfamPF002262.5E-19974IPR001623DnaJ domain
PRINTSPR006251.5E-121028IPR001623DnaJ domain
PRINTSPR006251.5E-122843IPR001623DnaJ domain
PRINTSPR006251.5E-124969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576675.16E-14282332No hitNo description
SMARTSM004510.001291325IPR003604Zinc finger, U1-type
PROSITE profilePS501579.39294323IPR007087Zinc finger, C2H2
PfamPF121711.6E-9294319IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003552.2294318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280296318IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034611640IPR007087Zinc finger, C2H2
SMARTSM003554.8611635IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280613635IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MAATDKRCYY EVLDLPQSCT PDEIRSAYKK LALQRHPDKL MQSGVSSADA TAAFQELVRA  60
YEVLSDPKER SWYDSHRSQI LFSSPSGSNS DSPFPDLFSY FSPSCYTDYN DPKTGFYKVY  120
GDVFDKIYAH EIKFSKLMGL RLGLVKEAPL LGDLRCDYSQ VNAFYGYWLG FCTVMDFGWV  180
DEYDAAAGAN RKSRRVMEEE NKKLRKKAKR EFNETVRGLA EFVKKRDKRV IDMMVRKEKE  240
REKKREEELA RKKEREREKL ERARLYEEPD WAKVKEVEVI EEEEENEEED RKEFYCAACG  300
KKFKSDKQWR NHEQSKKHKE KVAQLRKSFV EEDGFEDVEE VDVDDEVQQE DETVERVEGN  360
TEDQKNEAHD GFVSAEDDVD DLEENFKESV GLEEGRSRYE FLCDDEDGSV NDEEPNGIED  420
SEENPKESVG LEDGRSRYEL PSDDEDGIGN DKDPNEVEQS TRESDDESNI LEAMISGRRN  480
KKHVTFKNES LESNNAERED NLEPMEYNNK KGKKKSRRAK KEKGNVSHAE TTRAGDGDID  540
VQVEENNGLN TSDTANNGDD DQADNIEASS KAVKQSFGKK DKGTSKRDTE AKQKNSSKGR  600
KQKGSSKNRD PVCEKCGEEF ESRSKLHKHL SETGHASMKS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240252REKKREEELARKK
2509517KKGKKKSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695209.20.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-141JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A0K9RKE20.0A0A0K9RKE2_SPIOL; Uncharacterized protein
STRINGXP_010695209.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-124DNAJ heat shock N-terminal domain-containing protein