PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_125640_rrpy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 305aa    MW: 34509.7 Da    PI: 8.8662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_125640_rrpy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.9e-1493144155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A+e++k+L+
  Bv5_125640_rrpy.t1  93 QRMTHITVERNRRKQMNEHLAVLRSLMPES---YAQRGDQASIVGGAIEFVKELE 144
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-1491148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.05E-1291148No hitNo description
SuperFamilySSF474591.57E-1591155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.19992143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALEAIPNYN DIFNFMVYET LNSSQYGCNL GLMEDVPVHE KPQNLGGMSG LGSMGQCSTR  60
GIQNRRVDLG VQGRKKRRRR PKVCKNKEEA ETQRMTHITV ERNRRKQMNE HLAVLRSLMP  120
ESYAQRGDQA SIVGGAIEFV KELEHLVHSF EVQKLNFLKQ SATMNSEPGG IPTTKENNSM  180
LTPFAEFFSD SEHTFSQVGK KYTLMSKASI ADIEVTLIET HANLRILSKK NPRQISKLVS  240
GFQTLRLTIL HLNVTTLNPL VLYSINVKVE EGCQFTSVDS IAEAVHHMLR IIIERDDVVP  300
FLLTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RKKRRRR
27479KKRRRR
393104RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695562.10.0PREDICTED: transcription factor bHLH71
SwissprotQ9SK911e-69BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0J8E3C30.0A0A0J8E3C3_BETVU; Uncharacterized protein
STRINGXP_010695562.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-68bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]