PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_125780_orwr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 638aa    MW: 71317.1 Da    PI: 5.3709
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_125780_orwr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.7e-23130230198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f kvlt sd++++g +++ +k+a+e+       +  ++ +++l  ed++  +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF  
  Bv5_125780_orwr.t1 130 FSKVLTASDTSTHGGFSVLRKHANEClppldmtQ--QTPTQELAAEDLHRYVWRFKHIFRGQPRRHLLTTGWSHFVTSKRLVAGDSFVFL- 217
                         88****************************9643..445569************************************************. PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                          + +++el+v+v+r
  Bv5_125780_orwr.t1 218 -RGENGELRVGVRR 230
                         .449999*****98 PP
2Auxin_resp97.91.5e-32256335183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t++ F v+Y+Pr+  s+F++ ++k+++++++ + vGmRfkm+fe+ed +err++Gt+vgv dl+p +W++S+WrsLk
  Bv5_125780_orwr.t1 256 ASHAVTTHTYFVVYYKPRM--SQFIIGLNKYLESVDSGYKVGMRFKMRFEGEDTPERRFTGTIVGVDDLSP-QWKDSRWRSLK 335
                         689***************7..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-38121259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-40122245IPR015300DNA-binding pseudobarrel domain
CDDcd100175.19E-20128230No hitNo description
PROSITE profilePS5086311.406130232IPR003340B3 DNA binding domain
SMARTSM010196.8E-21130232IPR003340B3 DNA binding domain
PfamPF023629.7E-21130230IPR003340B3 DNA binding domain
PfamPF065071.7E-29256335IPR010525Auxin response factor
PfamPF023091.1E-6517562IPR033389AUX/IAA domain
SuperFamilySSF542776.38E-13522602No hitNo description
PROSITE profilePS5174523.273526607IPR000270PB1 domain
PfamPF023094.6E-6572611IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MANGMAFGQP NMSSGARDSG GVDVLYPELW RACAGPLVEI PRLREKVYYF PQGHMEQLEA  60
STNEELNQRI HMFNLPSKIL CRVLNIDLLA EKETDEVYAQ ITLMPEADQT EPLKPESCEP  120
EPPRPAIRSF SKVLTASDTS THGGFSVLRK HANECLPPLD MTQQTPTQEL AAEDLHRYVW  180
RFKHIFRGQP RRHLLTTGWS HFVTSKRLVA GDSFVFLRGE NGELRVGVRR VARQQSSMPS  240
SVISSQSMHL GVLATASHAV TTHTYFVVYY KPRMSQFIIG LNKYLESVDS GYKVGMRFKM  300
RFEGEDTPER RFTGTIVGVD DLSPQWKDSR WRSLKVQWDE PTSIARPDRV SPWEIEPFGS  360
SAPLDVTDTV VKNKKPRPSI EIPNHAFKSV NDSTPWNSSN DIVQGEVEDC KSATAWSVFP  420
GYTTPTPTKQ SNDLAENGKK TETLASYRLF GIDLMKPSTP TTQEDEYVQE PIGTGDSTEE  480
LGRSSDSGAA DSEQKSDLSK SSQEKRQILQ LSSPRDLQSK QGSSTRSRTK VQMQGVAVGR  540
AVDLTILESY DQLIDELEEL FDLKGELRPR DKWEIVFTDN EGDMMLVGDD PWTEFSSMAK  600
KIVICSSQEV KKMSAGSKMA ASSLEGDGTV VSMESSGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-170113605357Auxin response factor 1
4ldw_A1e-170113605357Auxin response factor 1
4ldw_B1e-170113605357Auxin response factor 1
4ldx_A1e-170113605357Auxin response factor 1
4ldx_B1e-170113605357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695583.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0J8B8H10.0A0A0J8B8H1_BETVU; Auxin response factor
STRINGXP_010695583.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9