PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_127190_stch.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 177aa    MW: 20216.2 Da    PI: 6.0501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_127190_stch.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171564255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Bv6_127190_stch.t1 15 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 64
                        69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-211573IPR016177DNA-binding domain
SMARTSM003802.6E-361578IPR001471AP2/ERF domain
PROSITE profilePS5103221.8121572IPR001471AP2/ERF domain
PfamPF008479.6E-111664IPR001471AP2/ERF domain
CDDcd000181.03E-241674No hitNo description
PRINTSPR003675.9E-111627IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-291673IPR001471AP2/ERF domain
PRINTSPR003675.9E-115474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEAGSTKKRE RAEKPYKGIR MRKWGKWVAE IREPNKRSRI WLGSYSTPVA AARAYDTAVY  60
YLRGPTARLN FPELLMGECR LSDLSAASIR KKAIEVGARV DALETAFQRS NNNNNNNHCH  120
DNSNHHRNHR DGGKVEEDDD DEEEREKSSG GCGWVVDDKP DLNKVPEPED SEEWEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1416771578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679510.11e-129PREDICTED: ethylene-responsive transcription factor ERF010
SwissprotQ9FH947e-62ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A0K9QM161e-93A0A0K9QM16_SPIOL; Uncharacterized protein
STRINGXP_010679510.11e-129(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.17e-53DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]