PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_127480_such.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 313aa    MW: 33935 Da    PI: 7.7221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_127480_such.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.1e-202267147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Bv6_127480_such.t1 22 KGPWSPEEDEALTRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 67
                        79******************************.***********985 PP
2Myb_DNA-binding544e-1776118347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Bv6_127480_such.t1  76 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 118
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.9971772IPR017930Myb domain
SuperFamilySSF466891.22E-3219115IPR009057Homeodomain-like
SMARTSM007174.7E-182170IPR001005SANT/Myb domain
PfamPF002491.7E-192267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-272375IPR009057Homeodomain-like
CDDcd001672.68E-172466No hitNo description
SMARTSM007172.9E-1473121IPR001005SANT/Myb domain
PROSITE profilePS5129420.75774123IPR017930Myb domain
CDDcd001671.23E-1176119No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2376122IPR009057Homeodomain-like
PfamPF002491.3E-1476118IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNRNNTCSSS DNNNRKEVDR IKGPWSPEED EALTRLVQKH GPRNWSLISK SIPGRSGKSC  60
RLRWCNQLSP QVEHRAFTPE EDDTIIRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK  120
RKCSAMLSSP SDEFPGDYPP PLKRAMSDGA DVILKNVSGL SLNNNNNNNN PGSPGSSDAS  180
DSGSHVFRPV AIPGPVNIGP APATDLSLSL PGSDCCCEGS NSDYEPVIAV SPIQTFPAMN  240
SPAMISPTSA FSQEFVAMMQ EMIKKEVRTY MEGIEMSNNN NGVGGFNYGG FCSQAADGVM  300
RAAMSRIGIG KIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-42211233105C-Myb DNA-Binding Domain
1msf_C7e-42211233105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679545.10.0PREDICTED: transcription factor MYB44
SwissprotO231601e-84MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0K9R0E41e-161A0A0K9R0E4_SPIOL; Uncharacterized protein
STRINGXP_010679545.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-80myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]