PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_127990_rmjs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 252aa    MW: 27952.6 Da    PI: 7.7555
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_127990_rmjs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.92.8e-322103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++
  Bv6_127990_rmjs.t1   2 SCNGCRVLRKGCSESCILRPCLqwidtPESQGHATVFVAKFFGRAGLMSFISNVPDSQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWN 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelall 97 
                         l+q+++e++l+
  Bv6_127990_rmjs.t1  93 LCQAAVETVLR 103
                         *****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.1281107IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPDSQR  60
PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WNLCQAAVET VLRGGTLRAI SEFLVGAPPS  120
PVPVTLDTDE NSEVFCPSKP YNNNNHNNTW RNHIGGGVDM MQQDFKMINH KKLQSSSSSL  180
PTPRFTNSKR RKEEDDHHVR LLDLSLTPPT FIHAPPRQRP ETPSLNSEES ATTVSFDSDA  240
VYYQPKTLNL FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679613.10.0PREDICTED: LOB domain-containing protein 37
SwissprotQ9SN233e-76LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0K9Q7W41e-129A0A0K9Q7W4_SPIOL; Uncharacterized protein
STRINGXP_010679613.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-78LOB domain-containing protein 38