PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_128880_yqzc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ZF-HD
Protein Properties Length: 290aa    MW: 32398.5 Da    PI: 8.9985
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_128880_yqzc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.84.5e-3258114360
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                          +rY+eC+kNhAa+lG+ +vDGCgEfmps geegt+ alkCaAC+CHRnFHRreve e
  Bv6_128880_yqzc.t1  58 MIRYRECQKNHAAHLGSRVVDGCGEFMPS-GEEGTPLALKCAACDCHRNFHRREVEGE 114
                         689*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2056111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-2959111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-2960111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.8761110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.36E-17223287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28225288IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-26226283IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEVKHPNKEI PIHFNSFISN NPSSSPLSPA QEEEKIPTLT PTPTLDSSHQ QIYQLKGMIR  60
YRECQKNHAA HLGSRVVDGC GEFMPSGEEG TPLALKCAAC DCHRNFHRRE VEGETTTTTT  120
TTTTGTNSGG IPLLPPPPSA MTTANCYISF SKYNKNRTPV TTATTTATAM PVHYQHGQYT  180
HNRVPLMMAF GGSGAAAESS SDDLNGYRAG NSDYGGQIID QYGLSKKRFR TKFTQDQKDK  240
MMEFAEKLEW KIQKQNDVEL QRFCTDVGVK RQVFKVWMHN NKQAMKKKQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-222272841875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679737.10.0PREDICTED: zinc-finger homeodomain protein 6
TrEMBLU5GHR24e-78U5GHR2_POPTR; Uncharacterized protein
STRINGXP_010679737.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-52homeobox protein 24