PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_128920_nmax.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB_related

Protein Properties

Length: 77aa MW: 8836.92 Da PI: 9.0601

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_128920_nmax.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1e-08	8	51	2	44
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W ++a+ +g ++++++k ++ Bv6_128920_nmax.t1 8 SNWTPKQNKLFEKALALYDKDtqdRWQKVANVVG--KSPEEVKRHY 51 58*****************************8..9******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.306	5	59	IPR017884	SANT domain
SMART	SM00717	3.6E-7	6	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-5	8	62	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.73E-13	8	62	IPR009057	Homeodomain-like
Pfam	PF00249	7.4E-7	9	51	IPR001005	SANT/Myb domain
CDD	cd00167	4.72E-6	9	51	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MASSSCSSNW TPKQNKLFEK ALALYDKDTQ DRWQKVANVV GKSPEEVKRH YEILVEDVKS 60 IERGQVPYPY RPTGHNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-28	1	76	1	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010679739.1	1e-52	PREDICTED: protein RADIALIS-like 1
Refseq	XP_010679740.1	1e-52	PREDICTED: protein RADIALIS-like 1
Swissprot	Q58FS3	1e-27	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A0K9R0E3	8e-42	A0A0K9R0E3_SPIOL; Uncharacterized protein
STRING	XP_010679739.1	5e-52	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	3e-28	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]