PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_129340_cuyh.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 387aa MW: 42362 Da PI: 6.9429

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_129340_cuyh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.6e-05	279	317	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq Bv6_129340_cuyh.t1 279 RKEKLGERIASLHQLVSPF-----GKTDTASVLTEAIGYIQFLQ 317 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.014	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-10	277	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-5	277	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-7	281	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDSTNFQHHE QRQQQQQQQQ QQHLQDHFVG CSPLNIPSSS YGVSTSLQWN STILPTTTSS 60 DNSNAFDNKQ YESEFLSCTT STLPKIEDDM LSSFPSFGGL IHNPSTTNTL ENINPWFNGL 120 ISTSPTIPFS TRPGLMQLPG LEVNSWGHNN HGFHGTSILN QLGLVSSPNN STASTVSSSS 180 PRLGLNLQAM DFLGNNSSFS AQTRTMTYDA VDGEEGISPN GIIMSNKTST LMNGSLTGTK 240 RAAGSCSSDQ SKASSTSNNS VASNKKSPLK VSCPPFKVRK EKLGERIASL HQLVSPFGKT 300 DTASVLTEAI GYIQFLQDQI HTLCMPHAKP SRSKPCRPFQ MGIGNEDDGK EEERIELRRR 360 GLCLVPYSWT SYIPPTQMDA SNHPTYF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDSTNFQHHE QRQQQQQQQQ QQHLQDHFVG CSPLNIPSSS YGVSTSLQWN STILPTTTSS  60
DNSNAFDNKQ YESEFLSCTT STLPKIEDDM LSSFPSFGGL IHNPSTTNTL ENINPWFNGL  120
ISTSPTIPFS TRPGLMQLPG LEVNSWGHNN HGFHGTSILN QLGLVSSPNN STASTVSSSS  180
PRLGLNLQAM DFLGNNSSFS AQTRTMTYDA VDGEEGISPN GIIMSNKTST LMNGSLTGTK  240
RAAGSCSSDQ SKASSTSNNS VASNKKSPLK VSCPPFKVRK EKLGERIASL HQLVSPFGKT  300
DTASVLTEAI GYIQFLQDQI HTLCMPHAKP SRSKPCRPFQ MGIGNEDDGK EEERIELRRR  360
GLCLVPYSWT SYIPPTQMDA SNHPTYF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010679784.1	0.0	PREDICTED: transcription factor bHLH110
STRING	XP_010679784.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-32	bHLH family protein