PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_129660_awud.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

SRS

Protein Properties

Length: 228aa MW: 24983.7 Da PI: 7.5588

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_129660_awud.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	175.1	3.2e-54	1	154	22	154
DUF702 22 eRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...........aeaaskrkrelkskkqsalsstklssaeskkele 101 +RCRtCCksrgfdC thvkstWvpa+ rrer+q+l + +++ +++ ++kr+r+ +++++s+l +t+l+ ++s+++++ Bv6_129660_awud.t1 1 MRCRTCCKSRGFDCVTHVKSTWVPASVRRERHQNLIIQDQHQPQQHqpqqeqehyymGVVNPKRRRD-NNSSSSSLVCTQLPITTSTTSVT 90 7****************************988877777766666566666777653333444444.45666666677666665555444 PP DUF702 102 tss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ +P+evsseavfrcvrvssvd+ +ee+aYqtav+igGhvfkGiLyd+G+++ Bv6_129660_awud.t1 91 NTNtasfsgmelrnFPAEVSSEAVFRCVRVSSVDETDEEYAYQTAVNIGGHVFKGILYDHGPDH 154 44456677777777**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	6.0E-16	1	27	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	4.0E-52	1	153	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	2.5E-27	105	152	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MRCRTCCKSR GFDCVTHVKS TWVPASVRRE RHQNLIIQDQ HQPQQHQPQQ EQEHYYMGVV 60 NPKRRRDNNS SSSSLVCTQL PITTSTTSVT NTNTASFSGM ELRNFPAEVS SEAVFRCVRV 120 SSVDETDEEY AYQTAVNIGG HVFKGILYDH GPDHPHQSSA PSPSYVAGET GGNLAVRPTA 180 SIGGPTAAAS IMPTSSSSPA VGYLDPSFYP LTYMSPGTPF FSNPNQRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010679824.1	1e-171	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	5e-50	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0K9QJA8	7e-70	A0A0K9QJA8_SPIOL; Uncharacterized protein
STRING	XP_010679824.1	1e-170	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-46	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]