PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_129830_cgqe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 1760aa    MW: 193278 Da    PI: 6.7872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_129830_cgqe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-0717381760326
                          S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                          ++ C+ f+++G+Ck G++Ck+ H+
  Bv6_129830_cgqe.t1 1738 QRVCK-FYESGYCKKGASCKYLHP 1760
                          789**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.105.5E-984146IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.31E-786149IPR011011Zinc finger, FYVE/PHD-type
CDDcd155682.36E-1899144No hitNo description
SMARTSM002497.0E-699145IPR001965Zinc finger, PHD-type
PROSITE patternPS013590100160IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001513.6E-4313398IPR019835SWIB domain
Gene3DG3DSA:1.10.245.103.4E-26314396IPR003121SWIB/MDM2 domain
SuperFamilySSF475925.45E-21316395IPR003121SWIB/MDM2 domain
PfamPF022011.5E-14320393IPR003121SWIB/MDM2 domain
PROSITE profilePS5136023.768453586IPR004343Plus-3 domain
SMARTSM007191.1E-35453563IPR004343Plus-3 domain
SuperFamilySSF1590428.63E-27454582IPR004343Plus-3 domain
PfamPF031261.3E-18458561IPR004343Plus-3 domain
SuperFamilySSF552771.7E-16787846IPR003169GYF domain
CDDcd000722.38E-15790844No hitNo description
PROSITE profilePS5082914.843790844IPR003169GYF domain
SMARTSM004443.9E-14791846IPR003169GYF domain
PfamPF022132.8E-11792837IPR003169GYF domain
Gene3DG3DSA:3.30.1490.406.0E-17792847IPR003169GYF domain
PRINTSPR012174.9E-1115031524No hitNo description
PRINTSPR012174.9E-1115241540No hitNo description
PRINTSPR012174.9E-1115421559No hitNo description
PROSITE profilePS5010315.74117351760IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-617351759IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-517381760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-417391759IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1760 aa     Download sequence    Send to blast
MAERRLTRII VQALPCVDKP VVRASFRTVD LTENVSKTSD SEVVRAPVAP MAEVELRKKR  60
GRPPKNPGAA LTATVASSSS SIGLANNNNK RSKKEDEDVC FICFDGGNLV LCDRRDCPKA  120
YHPACVKRDE SFFRRSIRWN CGWHLCNFCQ KNALFMCYTC PYSLCKGCVK QADILCVRRN  180
KGFCRTCMTT IMLIEKIPQE TKEQQVQVDF DDSTSWEYLF KVYWVYLKEK EALTLDELTR  240
ANNPWKVHTL DNDNLQQKRV ETCLNNVYEP SISNVQLETN ASKRRTTRKQ AQLLNLDSQN  300
AYDPDDNKAS GVQPAADWAS KELLEFVAHM KNGETSFLSQ FDVQALLLEY IRKNNLRDPR  360
RKCQIICDRR LETLFGKDRV GHFEMLKLLE YHFKEESRTN GVVRGAAIDL HFGQLENEGI  420
NGDSQTPSRE TRRQSRKKAE EKVRQIKLDS YAAIDAHNIN LIYLKQNLLE NLMVDKENFH  480
DKVVGSVVRI RISSNDQKQD MHRLVRIIGT SKATEPYRNS DRTESFMLKI LNLNKIEDIA  540
INDISDQEFS EDECRRLRQS IKLGLVERMT VGEIQEKAVA LQTVRVSDWL ETELRRLNHL  600
RDRASEMGHR KELRECVEKI ELLQAPEERL RRIHEIPDVH ADPRMDPSYG SDDDSGESDI  660
KKRDGHMTPK YSNANAKGVE LLSPVRAGSM PKDARSLKTA VTNGERKRKN RAKFHVGKAE  720
SATRPLESPN KTGRVDAASK DLEELNNRSN AGVISSDHGV TTGSVSQMAS DTVTALSSRM  780
LLVSDITELE KIWHYRDPSG KVQGPFCMLQ LRKWDSNGFF PTDLRVWKLK ETPDQSILLT  840
DALKKQQSTK PEIEPHVKQH SSLPSYRGAE SDDRKVNSVE ELSSNADVPS VGHMPNEEGE  900
NKNLTDITAT SEAYKLPASG CSSFLVSDNQ GGIVDSSGLD MKARLIESLF DTEEPSFAAT  960
PTGSSETMHV TLNCESSHPS TSTSKSDNAD LDIQPMKSQP ASPKDDRQDF QTGWGLTSSG  1020
AEASDLPNST PKSNSVDLKN LNLENKHHVV SKDFDANCGT ESSVTEFSHL PSVRPKTENK  1080
DVNDHFTVNN SAASAIYEQN PGTCTVSGGI DVSFLPSASP EVENEGLKPH AVENRHLISS  1140
NASRQDSEGI WGGISSEVDI SVLPSNKSNK EVPKTHAVEN KNYNSSNVPE QVSGTSWSTI  1200
SGGIVFSDLR NAAPKLESNG LETPVENKDC VSPDVPGQDR GTSWSAMSEG IEFSDLPTTS  1260
PKLDAASRGH AVGNKISVIQ DIPGQDSCIS WSTASSLVGR EVHLPDVASE WGAYSTVHTK  1320
AADFNSCLVS GSSVKLVEVA GEHATPSHSC HMTNLHCDTS SWQPIELSTL GDESVSDLLS  1380
EVEAMESLRG MSSPTSRMNC GDDSIDSPVN DCFSPLGGLS PNIDPGKHDA LSSTSDMHFH  1440
VQPNITEQSH GSFSVIGDLS RTTCILSTVS AGIGSPEVEE VKPLIASMPH QNFVSRALVS  1500
ALPPPPPPPP QPSPPPQPSP PPPPPKPSSP PPPQPSPPPQ PSPPPPSSLP LPSPPPPPPS  1560
QEGKPSSQPR QPTLSTLSLK CPSSPREEGE VDPASLSLPL PKAGLDHRPS PHISSMKVTS  1620
EAWKQGSATP AHSSGKIPGT SSILGNPNMH WSNSSPGMAA MSVNAHWNTS VVSPSARGSS  1680
QTSPRYNHST GRHSSSKDRS HHHHGADANF SKSRPTSWSR QSSFGGGGGS SRPPPRGQRV  1740
CKFYESGYCK KGASCKYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-14931661181Histone-lysine N-methyltransferase NSD3
4gnd_C1e-14931661181Histone-lysine N-methyltransferase NSD3
4gne_A1e-14931661181Histone-lysine N-methyltransferase NSD3
4gnf_A1e-14931661181Histone-lysine N-methyltransferase NSD3
4gng_A1e-14931661181Histone-lysine N-methyltransferase NSD3
4gng_D1e-14931661181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019105624.10.0PREDICTED: zinc finger CCCH domain-containing protein 44 isoform X1
TrEMBLA0A0K9QZQ00.0A0A0K9QZQ0_SPIOL; Uncharacterized protein
STRINGXP_010680076.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding