PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_129830_cgqe.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 1759aa    MW: 193150 Da    PI: 6.7872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_129830_cgqe.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-0717371759326
                          S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                          ++ C+ f+++G+Ck G++Ck+ H+
  Bv6_129830_cgqe.t2 1737 QRVCK-FYESGYCKKGASCKYLHP 1759
                          789**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.109.0E-984149IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.31E-786149IPR011011Zinc finger, FYVE/PHD-type
CDDcd155682.36E-1899144No hitNo description
SMARTSM002497.0E-699145IPR001965Zinc finger, PHD-type
PROSITE patternPS013590100160IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001513.6E-4312397IPR019835SWIB domain
Gene3DG3DSA:1.10.245.103.4E-26313395IPR003121SWIB/MDM2 domain
SuperFamilySSF475925.45E-21315394IPR003121SWIB/MDM2 domain
PfamPF022011.5E-14319392IPR003121SWIB/MDM2 domain
SMARTSM007191.1E-35452562IPR004343Plus-3 domain
PROSITE profilePS5136023.768452585IPR004343Plus-3 domain
SuperFamilySSF1590428.63E-27453581IPR004343Plus-3 domain
PfamPF031261.3E-18457560IPR004343Plus-3 domain
SuperFamilySSF552771.7E-16786845IPR003169GYF domain
CDDcd000722.38E-15789843No hitNo description
PROSITE profilePS5082914.843789843IPR003169GYF domain
SMARTSM004443.9E-14790845IPR003169GYF domain
PfamPF022132.8E-11791836IPR003169GYF domain
Gene3DG3DSA:3.30.1490.406.0E-17791846IPR003169GYF domain
PRINTSPR012174.9E-1115021523No hitNo description
PRINTSPR012174.9E-1115231539No hitNo description
PRINTSPR012174.9E-1115411558No hitNo description
PROSITE profilePS5010315.74117341759IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-617341758IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-517371759IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-417381758IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1759 aa     Download sequence    Send to blast
MAERRLTRII VQALPCVDKP VVRASFRTVD LTENVSKTSD SEVVRAPVAP MAEVELRKKR  60
GRPPKNPGAA LTATVASSSS SIGLANNNNK RSKKEDEDVC FICFDGGNLV LCDRRDCPKA  120
YHPACVKRDE SFFRRSIRWN CGWHLCNFCQ KNALFMCYTC PYSLCKGCVK QADILCVRRN  180
KGFCRTCMTT IMLIEKIPQE TKEQVQVDFD DSTSWEYLFK VYWVYLKEKE ALTLDELTRA  240
NNPWKVHTLD NDNLQQKRVE TCLNNVYEPS ISNVQLETNA SKRRTTRKQA QLLNLDSQNA  300
YDPDDNKASG VQPAADWASK ELLEFVAHMK NGETSFLSQF DVQALLLEYI RKNNLRDPRR  360
KCQIICDRRL ETLFGKDRVG HFEMLKLLEY HFKEESRTNG VVRGAAIDLH FGQLENEGIN  420
GDSQTPSRET RRQSRKKAEE KVRQIKLDSY AAIDAHNINL IYLKQNLLEN LMVDKENFHD  480
KVVGSVVRIR ISSNDQKQDM HRLVRIIGTS KATEPYRNSD RTESFMLKIL NLNKIEDIAI  540
NDISDQEFSE DECRRLRQSI KLGLVERMTV GEIQEKAVAL QTVRVSDWLE TELRRLNHLR  600
DRASEMGHRK ELRECVEKIE LLQAPEERLR RIHEIPDVHA DPRMDPSYGS DDDSGESDIK  660
KRDGHMTPKY SNANAKGVEL LSPVRAGSMP KDARSLKTAV TNGERKRKNR AKFHVGKAES  720
ATRPLESPNK TGRVDAASKD LEELNNRSNA GVISSDHGVT TGSVSQMASD TVTALSSRML  780
LVSDITELEK IWHYRDPSGK VQGPFCMLQL RKWDSNGFFP TDLRVWKLKE TPDQSILLTD  840
ALKKQQSTKP EIEPHVKQHS SLPSYRGAES DDRKVNSVEE LSSNADVPSV GHMPNEEGEN  900
KNLTDITATS EAYKLPASGC SSFLVSDNQG GIVDSSGLDM KARLIESLFD TEEPSFAATP  960
TGSSETMHVT LNCESSHPST STSKSDNADL DIQPMKSQPA SPKDDRQDFQ TGWGLTSSGA  1020
EASDLPNSTP KSNSVDLKNL NLENKHHVVS KDFDANCGTE SSVTEFSHLP SVRPKTENKD  1080
VNDHFTVNNS AASAIYEQNP GTCTVSGGID VSFLPSASPE VENEGLKPHA VENRHLISSN  1140
ASRQDSEGIW GGISSEVDIS VLPSNKSNKE VPKTHAVENK NYNSSNVPEQ VSGTSWSTIS  1200
GGIVFSDLRN AAPKLESNGL ETPVENKDCV SPDVPGQDRG TSWSAMSEGI EFSDLPTTSP  1260
KLDAASRGHA VGNKISVIQD IPGQDSCISW STASSLVGRE VHLPDVASEW GAYSTVHTKA  1320
ADFNSCLVSG SSVKLVEVAG EHATPSHSCH MTNLHCDTSS WQPIELSTLG DESVSDLLSE  1380
VEAMESLRGM SSPTSRMNCG DDSIDSPVND CFSPLGGLSP NIDPGKHDAL SSTSDMHFHV  1440
QPNITEQSHG SFSVIGDLSR TTCILSTVSA GIGSPEVEEV KPLIASMPHQ NFVSRALVSA  1500
LPPPPPPPPQ PSPPPQPSPP PPPPKPSSPP PPQPSPPPQP SPPPPSSLPL PSPPPPPPSQ  1560
EGKPSSQPRQ PTLSTLSLKC PSSPREEGEV DPASLSLPLP KAGLDHRPSP HISSMKVTSE  1620
AWKQGSATPA HSSGKIPGTS SILGNPNMHW SNSSPGMAAM SVNAHWNTSV VSPSARGSSQ  1680
TSPRYNHSTG RHSSSKDRSH HHHGADANFS KSRPTSWSRQ SSFGGGGGSS RPPPRGQRVC  1740
KFYESGYCKK GASCKYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-14931661181Histone-lysine N-methyltransferase NSD3
4gnd_C1e-14931661181Histone-lysine N-methyltransferase NSD3
4gne_A1e-14931661181Histone-lysine N-methyltransferase NSD3
4gnf_A1e-14931661181Histone-lysine N-methyltransferase NSD3
4gng_A1e-14931661181Histone-lysine N-methyltransferase NSD3
4gng_D1e-14931661181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019105625.10.0PREDICTED: zinc finger CCCH domain-containing protein 44 isoform X2
TrEMBLA0A0K9QZQ00.0A0A0K9QZQ0_SPIOL; Uncharacterized protein
STRINGXP_010680076.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding