PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_129910_cmip.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 401aa    MW: 45705.8 Da    PI: 5.0899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_129910_cmip.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.86.1e-5581371129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeelv +yLkkk++++k++l +vi+++d+y++ePwdL+      ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+
  Bv6_129910_cmip.t1   8 VPPGFRFHPTDEELVGYYLKKKIASQKIDL-DVIRDIDLYRIEPWDLQDrcgIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 97 
                         69****************************.9***************953543334677******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Bv6_129910_cmip.t1  98 DKAVFD-KSKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137
                         ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-606157IPR003441NAC domain
PROSITE profilePS5100559.2258157IPR003441NAC domain
PfamPF023651.3E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDSMESCVPP GFRFHPTDEE LVGYYLKKKI ASQKIDLDVI RDIDLYRIEP WDLQDRCGIG  60
YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VFDKSKLIGM RKTLVFYKGR  120
APNGQKSDWI MHEYRLESDE NGPPQEEGWV VCRAFKKKTS VQSKKMERWE SNYVYDEVSG  180
VSSVIDPIIH DHYDYDYDYI HTNTNPNTNT NTNNLKLMMK CKQEIESEAL AKFMHLASVD  240
NFLQLPQLET TSHQLPLLKR VSTSSISLAS SQNSNNNNNN YYVTSNICIN KNDNNCNNID  300
EDNDNGGGGG GGGVADWRAL DKFVASQLSQ DPKLIDVDHY QYLNNHREEM SSTSPSSDIE  360
ALLLLHGSSN EQIIDESKLI TGFLNSASAD TDNIGICIFD K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50816217170NO APICAL MERISTEM PROTEIN
1ut4_B2e-50816217170NO APICAL MERISTEM PROTEIN
1ut7_A2e-50816217170NO APICAL MERISTEM PROTEIN
1ut7_B2e-50816217170NO APICAL MERISTEM PROTEIN
3swm_A2e-50816220173NAC domain-containing protein 19
3swm_B2e-50816220173NAC domain-containing protein 19
3swm_C2e-50816220173NAC domain-containing protein 19
3swm_D2e-50816220173NAC domain-containing protein 19
3swp_A2e-50816220173NAC domain-containing protein 19
3swp_B2e-50816220173NAC domain-containing protein 19
3swp_C2e-50816220173NAC domain-containing protein 19
3swp_D2e-50816220173NAC domain-containing protein 19
4dul_A2e-50816217170NAC domain-containing protein 19
4dul_B2e-50816217170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679854.10.0PREDICTED: NAC domain-containing protein 37
SwissprotQ9SL411e-136NAC37_ARATH; NAC domain-containing protein 37
TrEMBLF6GWP21e-154F6GWP2_VITVI; Uncharacterized protein
STRINGXP_010679854.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-127vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]