PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_130620_tsza.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 320aa    MW: 35638.6 Da    PI: 7.6406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_130620_tsza.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-094594154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r++ +  rE+ RRdr+N+ f eL   + ++     +K++Ka+iL+ +++ +++L
  Bv6_130620_tsza.t1 45 RKVQKADREKLRRDRLNEHFLELGNAIDPD----RPKNDKATILTDTIQILRDL 94
                        5677889********************997....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.7544494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-84598No hitNo description
Gene3DG3DSA:4.10.280.102.8E-1145117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1345115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-74594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-750100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDQWKSNEVC QSLNNSLQTP VRSQSSQLDS RQRAEEEVKD PVTVRKVQKA DREKLRRDRL  60
NEHFLELGNA IDPDRPKNDK ATILTDTIQI LRDLTDEVNK LKAECAALSE ESHELTQEKN  120
ELREEKTSLR SDIENLNAQY QQRLRVVFPW GAVEPSVVMA PPYSYPLPMA VSSGPIPMHP  180
TLQPYPFFGS QNASAIPSPH PAFMPYPTHP NPHVEQQPIQ PASTSHVLSK PDSRTKASDV  240
GKARHLERTD DSSDVATELE LKTPGSGRQK ESLSGNRKGK QSQRKEKSAT DGGSSSRFSS  300
CQGPQESSCN SVSHIPKSGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679934.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT233e-84BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A498KGZ81e-139A0A498KGZ8_MALDO; Uncharacterized protein
STRINGXP_010679934.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.22e-86bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]