PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_130720_rkjk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WOX
Protein Properties Length: 340aa    MW: 38377.9 Da    PI: 6.9453
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_130720_rkjk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-1850111257
                         T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         ++R+t+t+eq++ L+el++    r psa++++ + ++l    +++ ++V++WFqN++a+e++
  Bv6_130720_rkjk.t1  50 STRWTPTTEQIKLLKELYYIngVRSPSADQIQSICARLrrygKIEGKNVFYWFQNHKARERQ 111
                         58****************95459*************************************97 PP
2Wus_type_Homeobox110.97.1e-3649113265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ++tRWtPt+eQik+L+ely+ +G+r+P++++iq i a+L++yGkie+kNVfyWFQN+kaRerqk+
  Bv6_130720_rkjk.t1  49 SSTRWTPTTEQIKLLKELYYiNGVRSPSADQIQSICARLRRYGKIEGKNVFYWFQNHKARERQKK 113
                         789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1131113IPR009057Homeodomain-like
PROSITE profilePS500719.86346112IPR001356Homeobox domain
SMARTSM003896.2E-448116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-651111IPR009057Homeodomain-like
PfamPF000462.8E-1551111IPR001356Homeobox domain
CDDcd000862.77E-651113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMEPQQQQQQ QQQQQQQQQQ QQQQEEMNMS INGGKMSNTT SSNYLCRQSS TRWTPTTEQI  60
KLLKELYYIN GVRSPSADQI QSICARLRRY GKIEGKNVFY WFQNHKARER QKKRLTPTSS  120
TTTASNNLTT TTTPQIHSNS TTTNNNFIRN GSLAWKQDHQ DMAIHAKYPC TINNPGVSCS  180
SSSAGMISGG GHLMGSYGYG AMNMENKFRD CSISGGVING GNHVNQWTSV GTNYNSYTPT  240
PYSNLLDKIS TVDEDPYIHD QDHYGVETQE IETLPLFPMH NEDNGYDHDL DHNHGFYTIK  300
PPSDGYYTGG YRWSNNGNGG NTSLELSLNS YGYGCYSQNL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2849060.0KT284906.1 Beta palonga isolate EMBOSS_001 transcription factor WUSCHEL (wus) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680087.10.0PREDICTED: protein WUSCHEL
TrEMBLA0A0K9S4961e-117A0A0K9S496_SPIOL; Uncharacterized protein
STRINGXP_010680087.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-38WOX family protein