PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_130850_hfat.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 208aa MW: 22645.3 Da PI: 8.544

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_130850_hfat.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Bv6_130850_hfat.t1 74 FSCTYCYRNFTSSQALGGHQNAH 96 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.51E-6	70	101	No hit	No description
Pfam	PF13912	5.5E-6	74	98	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.552	74	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MADSNNIHGN MFEFLTYPNN NTIDYQYYDT TVIHSRGTTT TSITNNNNSN KRLRETTPKL 60 QKRSCCINND NKIFSCTYCY RNFTSSQALG GHQNAHKRER SAARRLHLSS SSSSAIKTTN 120 THNHNTTTNT TNTTTNTTNN NNNSLQMSDY GYGYGYGYGN GIAYSSITPT NYPALPYYYP 180 SVSYFDDGEA SISGVSGGGG GGGGGGGD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-10	zinc-finger protein 1