PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_131450_fpap.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 249aa    MW: 28708.4 Da    PI: 7.8563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_131450_fpap.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002295117223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ C k ++++ +L  H +  H
  Bv6_131450_fpap.t1  95 SCSVCRKAYPTQRLLSIHVSEmH 117
                         6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.66792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003552.194117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003555.5132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAMEIEKGKS ESDFPYWESI RRKFDPDSPF FTSGNVERQL LAKQIALDLG VDEKQQLLDL  60
EEFGRDIFCP IAGCGSWLKS LDGFEDHYNA CHTASCSVCR KAYPTQRLLS IHVSEMHDSY  120
FKAKVARGYA VYECLVETCG LKFKSDRDRH QHLVDKHKFP ITFEFHKKTH LSKKQRQKHW  180
HKQALYKEEA SDAMLLEDQD TLESLTSAIS QLSTSDSVPS SISFGRRHSR GLTFVPRSVQ  240
RERRPGTNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680023.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A0K9QAW41e-135A0A0K9QAW4_SPIOL; Uncharacterized protein
STRINGVIT_14s0068g01930.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-109zinc ion binding;nucleic acid binding;zinc ion binding