PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_131640_dakt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 625aa    MW: 66882.6 Da    PI: 9.4632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_131640_dakt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05102124123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ C+k F r  nL+ H r H
  Bv6_131640_dakt.t1 102 FICEVCNKGFQREQNLQLHRRGH 124
                         89*******************88 PP
2zf-C2H213.70.00018179201123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Bv6_131640_dakt.t1 179 FKCEKCSKRYAVQSDWKAHSKTC 201
                         89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.6E-8101124No hitNo description
Gene3DG3DSA:3.30.160.607.1E-6101124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.1E-5102124IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.99102124IPR007087Zinc finger, C2H2
SMARTSM003550.0052102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM00355140144174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5167200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.6E-8174199No hitNo description
SMARTSM0035588179199IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MAASSSSSAF FGGREGDAMK LTHHQHQQQQ PPPQQPPQLQ PQQPQLQLQQ QHSLAVPPPS  60
SSAPPTNPQQ KKKRSLPGTP SKYPDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH  120
RRGHNLPWKL RQKTKNEIVK KKVYLCPEPT CVHHDPARAL GDLTGIKKHY SRKHGEKKFK  180
CEKCSKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARHPTS  240
LATLGSHLFG SSGATIGGNT SNNNMGLGVG LSHQMANHHL PTSLSDQMTS DILRLGGGGR  300
GMGTGQFDHL LGPNSFRQQP NMQQSQANFY LSDQSGGPNH YANTSTTNND QENQSQNAGG  360
GIFSNKLFPG QLPVHDLGFF SNNNNNNENT NTINTSNNTN GSGDHSGLFS PTGSGSLFGG  420
QPSGGGLSSL YTTGPALQAS PHMSATALLQ KAAQMGSTTS TNNASATALL KGLDTKPITQ  480
QQSISNPPPT SGGGGYAGLF GENDQNNLHE LLMRDNLMNN PFFGQDHQTG ATGDHNSNYG  540
GFNPNKSGLG VGSSDRLTRD FLGVGEIVRS MSGGGFTANS QNMASLDNVA DHQRNNSTTA  600
ANNNSTLNNS APSSSSQAFG GGNNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33175236364Zinc finger protein JACKDAW
5b3h_F1e-33175236364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680044.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0K9RP190.0A0A0K9RP19_SPIOL; Uncharacterized protein
STRINGXP_010680044.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-111indeterminate(ID)-domain 5