PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_131690_nsis.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

G2-like

Protein Properties

Length: 412aa MW: 46988.3 Da PI: 6.7194

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_131690_nsis.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG+ekAtPk +l+lm+v gLt++hvkSHLQ+YR+ Bv6_131690_nsis.t1 23 PRLRWTPDLHRCFVHAIERLGGQEKATPKLVLQLMDVRGLTISHVKSHLQMYRS 76 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-31	19	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.586	19	79	IPR017930	Myb domain
SuperFamily	SSF46689	4.66E-15	21	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-24	23	77	IPR006447	Myb domain, plants
Pfam	PF00249	6.2E-8	24	75	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MEVGNKNSSN SNGVRQYVRS KVPRLRWTPD LHRCFVHAIE RLGGQEKATP KLVLQLMDVR 60 GLTISHVKSH LQMYRSMKID HTRQGDKSFT QQRKQAFENH HNNNASTTNY IIEEEKKDVG 120 LHLICSSNTT NHLLQDHQAT ISASFPPSKR ARLEERCTSS SNMMMMREKM ECSQREKQQR 180 MGIMSEEEEG VRKNTKLYCQ VDDYKSQLES ILNNSKSETK EVGVVGISLK GDNTKVQEVE 240 EEEEEVGLLE ERGLNIIRWQ HQHQETDQDH FYKFHHLLAL HAHPSHFLNF QEAISYEHSD 300 QNQAHYIYHP QTFIGPEKLS KDVCKEIKAT AAADDGEELA AGRRDDKCGL SLSLSLPQTT 360 SPLLNQRSSN NSSTNVSEIS DQAMSSYSSS SSTWEDHHHS LNLDLSISLC GS

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MEVGNKNSSN SNGVRQYVRS KVPRLRWTPD LHRCFVHAIE RLGGQEKATP KLVLQLMDVR  60
GLTISHVKSH LQMYRSMKID HTRQGDKSFT QQRKQAFENH HNNNASTTNY IIEEEKKDVG  120
LHLICSSNTT NHLLQDHQAT ISASFPPSKR ARLEERCTSS SNMMMMREKM ECSQREKQQR  180
MGIMSEEEEG VRKNTKLYCQ VDDYKSQLES ILNNSKSETK EVGVVGISLK GDNTKVQEVE  240
EEEEEVGLLE ERGLNIIRWQ HQHQETDQDH FYKFHHLLAL HAHPSHFLNF QEAISYEHSD  300
QNQAHYIYHP QTFIGPEKLS KDVCKEIKAT AAADDGEELA AGRRDDKCGL SLSLSLPQTT  360
SPLLNQRSSN NSSTNVSEIS DQAMSSYSSS SSTWEDHHHS LNLDLSISLC GS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680052.1	0.0	PREDICTED: myb family transcription factor PHL11
TrEMBL	A0A0K9QPU9	1e-126	A0A0K9QPU9_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010680052.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-34	G2-like family protein