PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_132230_qftx.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 727aa MW: 83231.7 Da PI: 7.0714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_132230_qftx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.6	1.3e-25	88	189	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k e++ +r+ +t+C+a+++vk++ dg+w++++ Bv6_132230_qftx.t1 88 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKGnrprirqcnkqePESATGRRSCGKTNCRASMHVKRRPDGRWVIHS 178 9************************************999998889999999775555555589999****************** PP FAR1 81 leleHnHelap 91 + +eHnHel p Bv6_132230_qftx.t1 179 FIKEHNHELLP 189 ******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-23	88	189	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.087	445	481	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-6	456	483	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MDIDLRLPSE EQDRQDEDQN TVSDMLDRED KLDNSGDGET ALIVGEVHAE EELTLNSTTS 60 DLAVFNEDVN LEPLSGMEFV SHQEAYAFYQ EYARSMGFNT AIQNSRRSKT SREFIDAKFA 120 CSRYGTKREY DKGNRPRIRQ CNKQEPESAT GRRSCGKTNC RASMHVKRRP DGRWVIHSFI 180 KEHNHELLPA QAVSEQTRKM YAAMARNYAE YKNVVGLKND SKVPSDKSRN LLLEAGDAKL 240 LLEFFTQMQN VNSNFFYAVL ENLGHVIKKH ENFMAKFDKC IYRSWGDEEF EKRWHKLVAK 300 FELNKDDEWI QSLYDYRMLW VPTYMKDSFL AGMSAVQRSD SVNSYFDKFL HKKTTVSEFL 360 KQYDTIVQDR YEEEARADSD TWNKQPALKS PSPFEKHMST LYTHALFKKF QVEVLGAVAC 420 HPKRERQDEL KTIFKVQDFE KNQDFMVTWN ELKSEVSCIC HLFEYRGFLC RHAMIVLQIC 480 GLSMIPSQYI LKRWTKDAKD RHLIVEGTEQ VPSRVQRYND LCNRAMKLGE EGSLSQESYA 540 LTLRALDEAF TNCIGVNNAC KTLPEVGTSA AHGLLSIEDS SPSRSFSKTA KKKNPTKKRK 600 VNAEAQPMTI GPQDGLQQMD KLGSRPVTTL DGFYGTQQGV QGMVQLNLMA PTRENYYGSQ 660 PAIQGLGQLN SIAPSHEGYY GQQSMHGLGQ MDFFRAPTGF SYGIRVSSPE EANVRSAQMH 720 DDGARHS

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MDIDLRLPSE EQDRQDEDQN TVSDMLDRED KLDNSGDGET ALIVGEVHAE EELTLNSTTS  60
DLAVFNEDVN LEPLSGMEFV SHQEAYAFYQ EYARSMGFNT AIQNSRRSKT SREFIDAKFA  120
CSRYGTKREY DKGNRPRIRQ CNKQEPESAT GRRSCGKTNC RASMHVKRRP DGRWVIHSFI  180
KEHNHELLPA QAVSEQTRKM YAAMARNYAE YKNVVGLKND SKVPSDKSRN LLLEAGDAKL  240
LLEFFTQMQN VNSNFFYAVL ENLGHVIKKH ENFMAKFDKC IYRSWGDEEF EKRWHKLVAK  300
FELNKDDEWI QSLYDYRMLW VPTYMKDSFL AGMSAVQRSD SVNSYFDKFL HKKTTVSEFL  360
KQYDTIVQDR YEEEARADSD TWNKQPALKS PSPFEKHMST LYTHALFKKF QVEVLGAVAC  420
HPKRERQDEL KTIFKVQDFE KNQDFMVTWN ELKSEVSCIC HLFEYRGFLC RHAMIVLQIC  480
GLSMIPSQYI LKRWTKDAKD RHLIVEGTEQ VPSRVQRYND LCNRAMKLGE EGSLSQESYA  540
LTLRALDEAF TNCIGVNNAC KTLPEVGTSA AHGLLSIEDS SPSRSFSKTA KKKNPTKKRK  600
VNAEAQPMTI GPQDGLQQMD KLGSRPVTTL DGFYGTQQGV QGMVQLNLMA PTRENYYGSQ  660
PAIQGLGQLN SIAPSHEGYY GQQSMHGLGQ MDFFRAPTGF SYGIRVSSPE EANVRSAQMH  720
DDGARHS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680156.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_019105676.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_019105677.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_019105678.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A1R3IYV4	0.0	A0A1R3IYV4_9ROSI; Uncharacterized protein
STRING	XP_010680156.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]