PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_132240_tzqh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 371aa    MW: 39329.8 Da    PI: 8.3169
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_132240_tzqh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00133659123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        +kC+ C+k  s+   ++ H    H
  Bv6_132240_tzqh.t1 36 FKCHVCNKKLSTAGGMVIHVLQvH 59
                        89************9999987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080810.367766IPR003656Zinc finger, BED-type
SuperFamilySSF576672.52E-51161No hitNo description
SMARTSM003553.51235IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.0183659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGKKKKRQTE KVFCYYCDRE FDDEKILLQH QKAKHFKCHV CNKKLSTAGG MVIHVLQVHK  60
ENVTKVPNAK PEREATDIEI YGMQGIPPDI LAAHYGETEE DASSKSAKIV PAPNIVGMMP  120
GAVGFAPPAT YGVMQRPMYN PGVPAPLGWH VPRPPPWYPP PPAVSVPSSV SAPPAASVPP  180
QQPLFPVQNI TPPLSAAGAP VSQPPYPPGV HSSPAPIPVS QPLFPVGAAA GMPNQTSAVS  240
APGFPPSMST IPSDIRASAA AYANSPLNVV NNYHIPNGAG AAVNSHSYAS GPNTGGPSIG  300
PPPVIANKAP ANQSAGNEVY LVWDDEAMSM EERRASLPKH QVHDETSQMN SIDAAIDRRI  360
SESRLAGRMA F
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9116660.0JQ911666.1 Beta vulgaris subsp. vulgaris cultivar SBSI-OT7112 SUF4 C2H2-type zinc finger protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680158.10.0PREDICTED: protein SUPPRESSOR OF FRI 4
SwissprotQ9C5G01e-135SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLI0C0510.0I0C051_BETVU; SUF4 C2H2-type zinc finger protein (Fragment)
STRINGXP_010680158.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-129C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]