PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_132760_wkcm.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 222aa    MW: 26357.5 Da    PI: 5.333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_132760_wkcm.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.34.1e-29141401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikev.diykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                         lppGf+F+Ptdeelv ++L  k+e+++   + ++ i+++ + y++ +P++L+  + ++ ++wyf++++          nr+ ++gyWk+  
  Bv6_132760_wkcm.t2  14 LPPGFKFDPTDEELVLHFLYSKLESSSnsQNNTHLIPQLeEFYHHyHPSQLQGVAFESCNQWYFYTRKT--------DNRISENGYWKELM 96 
                         79*********************99994323334599995555434*****955555678*****9874........58999******865 PP

                 NAM  88 k.dkevlsk.kgelvglkktLvfykgrap.kgektdWvmheyrl 128
                           ++++l + +++l g kk Lvfykg+ p +g+kt+W+m+ey++
  Bv6_132760_wkcm.t2  97 DiEQPILGSkSNKLAGFKKCLVFYKGKYPsSGVKTRWFMQEYHA 140
                         54899998756777***********97652799*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-345166IPR003441NAC domain
PROSITE profilePS5100533.35214168IPR003441NAC domain
PfamPF023652.8E-2015139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MMEKYEHIVK IEQLPPGFKF DPTDEELVLH FLYSKLESSS NSQNNTHLIP QLEEFYHHYH  60
PSQLQGVAFE SCNQWYFYTR KTDNRISENG YWKELMDIEQ PILGSKSNKL AGFKKCLVFY  120
KGKYPSSGVK TRWFMQEYHA CISSIVGDTR RSKHPDFNKW VLCRVQHIID ESHWMMNTFY  180
EDNYNKEVEL SSSDEAVFVA MEEDNDDQDE VISSPYYNVI KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-201416515165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680225.11e-168PREDICTED: NAC domain-containing protein 104 isoform X2
TrEMBLA0A1B1SHU01e-82A0A1B1SHU0_9CARY; NAC3
STRINGXP_010680224.11e-162(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-34xylem NAC domain 1