PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_132770_wshi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 208aa    MW: 24705.6 Da    PI: 4.6674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_132770_wshi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.49.1e-3071331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikev.diykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                         lppGfrF+Ptdeelv ++L  k+e+++   + ++ i+e+ + y++ +P++L+  + ++ ++wyf++++          nr+ ++gyWk+  
  Bv6_132770_wshi.t1   7 LPPGFRFDPTDEELVLHFLYSKLESSSnsQNNNDLIPELqEFYHHyHPSQLQGVAFESCDQWYFYTRKT--------DNRISENGYWKELM 89 
                         79*********************999954444456**996555434*****9544455779****9874........58999******765 PP

                 NAM  88 k.dkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           ++++l + +++l g kk Lvfykg   p+g+kt+W+m+ey++
  Bv6_132770_wshi.t1  90 DmEQPILGSnSNKLAGFKKCLVFYKGkYPPSGVKTRWFMQEYHA 133
                         538899987567779*********9945789***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-344159IPR003441NAC domain
PROSITE profilePS5100534.7927161IPR003441NAC domain
PfamPF023658.6E-218132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVNIKQLPPG FRFDPTDEEL VLHFLYSKLE SSSNSQNNND LIPELQEFYH HYHPSQLQGV  60
AFESCDQWYF YTRKTDNRIS ENGYWKELMD MEQPILGSNS NKLAGFKKCL VFYKGKYPPS  120
GVKTRWFMQE YHACFSTIVG DTRRSKHPDL NKWVLCRVQQ IFDESHWMMN TFYEDNYNKE  180
VELSSSDEAV FVSMEDYDDE DEVISCPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-21715815165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680223.11e-157PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A1B1SHU02e-83A0A1B1SHU0_9CARY; NAC3
STRINGXP_010680223.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-35xylem NAC domain 1