PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_132940_sniz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 291aa    MW: 33744.7 Da    PI: 7.5482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_132940_sniz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08140180954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Bv6_132940_sniz.t1 140 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 180
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14136198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12137189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.84E-9137185No hitNo description
SMARTSM003538.6E-13137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6141180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDMEDHHHQQ QQHHHHHHQQ QHHHQHQNHH VLMPLVDPIW PTYHNNLPTL PHEPSPPSII  60
IQHPNNTSPS SSSYMIKPSL QEQVIDEDDE EVEEEEELGA MKEMMYRIAV MQPVDIDPAT  120
IRKPKRRNVR ISNDPQSVAA RHRRERISEK IRILQRLVPG GTKMDTASML DEAIRYVKFL  180
KRQIRRLQYG SSSNNNHNHH PPPLPALPPS DWPPPPPSAS LVSSRNDSKD VQHHHDGMIF  240
QHGENLAKCT SKSQASRTNT HWNKHDKEIR EQTNITGKYY LQRCGETPVG S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680245.11e-178PREDICTED: transcription factor HEC3
TrEMBLA0A0K9RSP85e-68A0A0K9RSP8_SPIOL; Uncharacterized protein
STRINGXP_010680245.11e-178(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.17e-46bHLH family protein