PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_132950_zmxt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 973aa    MW: 109059 Da    PI: 7.7754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_132950_zmxt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.5e-06130149525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C++fa  G C++G++C+F H
  Bv6_132950_zmxt.t1 130 ICKDFAG-GRCRRGSSCHFLH 149
                         7999998.************* PP
2zf-CCCH22.22.4e-07198218526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd+C+++H 
  Bv6_132950_zmxt.t1 198 ICNDFLK-GRCRRGDSCRYMHH 218
                         6******.*************6 PP
3zf-CCCH22.22.5e-07286306425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                          +C+ffa+ G C+ G rC+F+H
  Bv6_132950_zmxt.t1 286 TPCKFFAA-GNCRNGTRCRFSH 306
                         59**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.732125152IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4127151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6129152IPR000571Zinc finger, CCCH-type
PfamPF146080.11130149No hitNo description
PROSITE profilePS5010315.112193220IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5193219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4198218IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4198218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699282309IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6282308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6282307IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-5286306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5287310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MSGSSKRRHS KWDHKDSEAL PENFYDRAQP RRPREPVSPV RGSRRHDSRS RESPVAWDRE  60
GNCPRISPGL DEWRPRHSSR SPRNGWSRSH RISKSRSRSR SRSQSPAHNF RRDPAVNDRS  120
RSRSGLSPQI CKDFAGGRCR RGSSCHFLHQ DAQLYDNRRP LECDPPDDWE RRRRSGGSRY  180
SSDDAKDNAI RTDKSAHICN DFLKGRCRRG DSCRYMHHDN AGDVFEKGSV EDVHRNRDHE  240
HRSRDTYYDH DHDRRNRDTY SDHEHRRKDT YPDRNHESEP PKRLETPCKF FAAGNCRNGT  300
RCRFSHQVQE SFSPERRSRE DRRGPDRKFE SGQVRDGPRW SDATTVSTVP AVQGWKEDKK  360
ENNEVNTARA QSDGKRADRK YEGDQVWDGP SWSDTLIVPN VTVVHGWGED KNESAELTED  420
MTRGGHKDDS SSHVRLDINQ TWDTLPTEKP QFQDKKQLLL QYKMEDNVPS LGHFASGGVE  480
NLSGDMEISP RVTKQQAVKS STSQTPSISN ISFADVHPDA AGEASFEKHY HTGLQEQKAF  540
HDTSAELHPI FNNSKPTSYS GEKRETIRDH DGAFIIQNQA VNVPPEHGLL QSDPSGSVHP  600
ISHVNLPPGN SQLSFSSRPS PGETMQVSHN PSSFLDSKVG EGSYVASLGQ GGIVQPDLNV  660
SAYPISNTNS SLGQTQLSLP PHPSRGETMQ VSQNPSSFLD HKVSDGSHEA SLASSTLAPG  720
SVTSHGTVSN EQLAQLSHLT ASLTQLLESR QQLSQFSSAA ASLGMSNLPD LAAPVPPVPS  780
AVIQSNQAPE VLKQYDPVCN SIEPKIPNLG NHLLPTAEQK SINNELHHLG NSEIHHEGDN  840
VNQQEPLVSF KDEENGKKAF EERIKVPENG PSEDVGADDG DHDGKKLKDI KGIRPFKFAL  900
AEFVKELLKP YWKDGQVSKE AYKTIVKKVV DKVTETLGPQ IPQTKEKIDL YLSCSKPKIE  960
KLVQAYVGKH LKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680246.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010680247.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010680248.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
TrEMBLA0A0K9RSN70.0A0A0K9RSN7_SPIOL; Uncharacterized protein
STRINGXP_010680246.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-08C3H family protein