PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_132950_zmxt.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 1015aa    MW: 113829 Da    PI: 7.6805
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_132950_zmxt.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-06172191525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         +C++fa  G C++G++C+F H
  Bv6_132950_zmxt.t2 172 ICKDFAG-GRCRRGSSCHFLH 191
                         7999998.************* PP
2zf-CCCH22.22.5e-07240260526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd+C+++H 
  Bv6_132950_zmxt.t2 240 ICNDFLK-GRCRRGDSCRYMHH 260
                         6******.*************6 PP
3zf-CCCH22.12.6e-07328348425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                          +C+ffa+ G C+ G rC+F+H
  Bv6_132950_zmxt.t2 328 TPCKFFAA-GNCRNGTRCRFSH 348
                         59**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.732167194IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4169193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-6171194IPR000571Zinc finger, CCCH-type
PfamPF146080.11172191No hitNo description
PROSITE profilePS5010315.112235262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5235260IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5235261IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4240260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4240260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6324349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699324351IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6324350IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-5328348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5329352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
MLLNLVKLKS GNSSRLKIED VWWLIKEISH FVFEGAGSLA EEMSGSSKRR HSKWDHKDSE  60
ALPENFYDRA QPRRPREPVS PVRGSRRHDS RSRESPVAWD REGNCPRISP GLDEWRPRHS  120
SRSPRNGWSR SHRISKSRSR SRSRSQSPAH NFRRDPAVND RSRSRSGLSP QICKDFAGGR  180
CRRGSSCHFL HQDAQLYDNR RPLECDPPDD WERRRRSGGS RYSSDDAKDN AIRTDKSAHI  240
CNDFLKGRCR RGDSCRYMHH DNAGDVFEKG SVEDVHRNRD HEHRSRDTYY DHDHDRRNRD  300
TYSDHEHRRK DTYPDRNHES EPPKRLETPC KFFAAGNCRN GTRCRFSHQV QESFSPERRS  360
REDRRGPDRK FESGQVRDGP RWSDATTVST VPAVQGWKED KKENNEVNTA RAQSDGKRAD  420
RKYEGDQVWD GPSWSDTLIV PNVTVVHGWG EDKNESAELT EDMTRGGHKD DSSSHVRLDI  480
NQTWDTLPTE KPQFQDKKQL LLQYKMEDNV PSLGHFASGG VENLSGDMEI SPRVTKQQAV  540
KSSTSQTPSI SNISFADVHP DAAGEASFEK HYHTGLQEQK AFHDTSAELH PIFNNSKPTS  600
YSGEKRETIR DHDGAFIIQN QAVNVPPEHG LLQSDPSGSV HPISHVNLPP GNSQLSFSSR  660
PSPGETMQVS HNPSSFLDSK VGEGSYVASL GQGGIVQPDL NVSAYPISNT NSSLGQTQLS  720
LPPHPSRGET MQVSQNPSSF LDHKVSDGSH EASLASSTLA PGSVTSHGTV SNEQLAQLSH  780
LTASLTQLLE SRQQLSQFSS AAASLGMSNL PDLAAPVPPV PSAVIQSNQA PEVLKQYDPV  840
CNSIEPKIPN LGNHLLPTAE QKSINNELHH LGNSEIHHEG DNVNQQEPLV SFKDEENGKK  900
AFEERIKVPE NGPSEDVGAD DGDHDGKKLK DIKGIRPFKF ALAEFVKELL KPYWKDGQVS  960
KEAYKTIVKK VVDKVTETLG PQIPQTKEKI DLYLSCSKPK IEKLVQAYVG KHLKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680246.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010680247.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_010680248.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
TrEMBLA0A0K9RSN70.0A0A0K9RSN7_SPIOL; Uncharacterized protein
STRINGXP_010680246.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-08C3H family protein