PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_133340_zkhw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 336aa    MW: 36923.6 Da    PI: 6.3164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_133340_zkhw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20146195255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa+a+++a++k++g
  Bv6_133340_zkhw.t1 146 KYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFETAEAAARAYDEAALKFRG 195
                         8********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-33145204IPR001471AP2/ERF domain
PfamPF008471.4E-13146195IPR001471AP2/ERF domain
PROSITE profilePS5103225.646146203IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23146204IPR016177DNA-binding domain
CDDcd000184.90E-23146205No hitNo description
SMARTSM003804.4E-39146209IPR001471AP2/ERF domain
PRINTSPR003671.0E-11147158IPR001471AP2/ERF domain
PRINTSPR003671.0E-11169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MQEMVSALTH VISGNNSSSS SSVNVLPSYG VKRRHEGEVE DARIEYGGNR MLFGEHDIFS  60
DVKPVYSSSY HQSYLASNKG GPSFMIPTTT STSASTSSST TITSTTSSSS SSSSTFTYTH  120
HDSIKNEAKN TTPQQPQVVG EPSRRKYRGV RQRPWGKWAA EIRDPYKAAR VWLGTFETAE  180
AAARAYDEAA LKFRGSKAKL NFPENVTSHN IPANIPATQF IFSDSPATLL TDSRNSDQIM  240
QNRPLECIQE TGEFKDYLDY SKIIGASFQE NHGDLSFLDQ MLMSSTLSSQ SFPLQTSNSM  300
DSSVSLPISS TSYPTADMLP RGSQRKMDDD DSKDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-25145206163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-25145208468ATERF1
3gcc_A3e-25145208468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680295.10.0PREDICTED: ethylene-responsive transcription factor ERF115
TrEMBLA0A0K9RX281e-91A0A0K9RX28_SPIOL; Uncharacterized protein
STRINGXP_010680295.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-28related to AP2 6