PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_134000_cdca.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Dof
Protein Properties Length: 352aa    MW: 37851.7 Da    PI: 8.2428
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_134000_cdca.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.2e-393190261
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        ++ +lkcprCds+ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk kk+
  Bv6_134000_cdca.t1 31 EQPSLKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKKH 90
                        56789***************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-261589IPR003851Zinc finger, Dof-type
PfamPF027016.0E-333489IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4133589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMSSENIPPV TDTSNNNSPI ARKSTVPKTQ EQPSLKCPRC DSSNTKFCYY NNYSLTQPRH  60
FCKTCRRYWT KGGALRNVPI GGGCRKTKKH KPSSSFPNSS TSSRFDLSAG PGNFLAPPTV  120
TPAMEFQLGG LSLPRLHPAT AGVYTQFIAS SGSHHQPIGI GMGSGTAGCF SLDLLGLSNN  180
YPTIPSSGNS SSSSSSSLSL AGSGATATAT AAGMGAGDHT ISISSIESLS SINQEMHWKL  240
QQQRLALIYG PTSVEDDHQE KNHLGGGGGE MSLFKNLEST RKLDVAGPTP TEWLFEQIQS  300
NQHSSANYGN NGATENNNTT NCNNHHQDFN GIWTTELHHH QQQQHHQFNG LQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680376.10.0PREDICTED: dof zinc finger protein DOF5.7
TrEMBLA0A0K9Q8D43e-74A0A0K9Q8D4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010680376.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.17e-43Dof family protein