PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_134530_gphk.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

LBD

Protein Properties

Length: 529aa MW: 60276.2 Da PI: 6.7165

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_134530_gphk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.9	3e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp +qp +fanvhk+FGasnv kll++l+ ++reda++sl+yeA++r++dPvyG+vg+i+ lqq+l++ + Bv6_134530_gphk.t1 7 PCAACKFLRRKCTQECVFAPYFPPDQPTRFANVHKVFGASNVAKLLNELRADQREDAVNSLAYEAQMRLQDPVYGCVGMISVLQQRLRNIQ 97 7****************************************************************************************** PP DUF260 92 aelallkee 100 +l ++k+e Bv6_134530_gphk.t1 98 GDLYTAKKE 106 999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.256	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPTRFANVH KVFGASNVAK LLNELRADQR 60 EDAVNSLAYE AQMRLQDPVY GCVGMISVLQ QRLRNIQGDL YTAKKELASY IGPSALMPAM 120 TPGVAANVMQ VMQQQVNMMG VPIGTTATPC NVSLATAAAA GVAHMHPQEI AGARHLASLV 180 GRDEQKMVVK WGHEQLQDHQ QQQQQLQEQQ QQQQQLQEQQ QQQQQLQEQQ QQQQQLQEQQ 240 QQQQQQQQQQ QQQFLGFNGS RTMYEGAMVV GGSSSGVGFD QVGSASVAVS PSLALGAATF 300 DHNAYNQIQA QQPQQQQDES LGQLLLLQQP ATPQQQQQLQ GHGEIDQLIP HHELNQQPHH 360 QGSTSHSHHQ FILQPHHHEH NQQPHQASTS HTHHQFMLHP HHYEHDQQPL HHHEHNQQPH 420 QGSTSHTHHQ FMLHPHHHEH DQQPLHHHEH NQQPHQGSTS HTHHQFLLQP LHHEHNQQPL 480 HIEHNQQPLQ QQLLLLQQQE QSQQQQQQQQ QQQQQRDGSE EGWTIGPPL

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPTRFANVH KVFGASNVAK LLNELRADQR  60
EDAVNSLAYE AQMRLQDPVY GCVGMISVLQ QRLRNIQGDL YTAKKELASY IGPSALMPAM  120
TPGVAANVMQ VMQQQVNMMG VPIGTTATPC NVSLATAAAA GVAHMHPQEI AGARHLASLV  180
GRDEQKMVVK WGHEQLQDHQ QQQQQLQEQQ QQQQQLQEQQ QQQQQLQEQQ QQQQQLQEQQ  240
QQQQQQQQQQ QQQFLGFNGS RTMYEGAMVV GGSSSGVGFD QVGSASVAVS PSLALGAATF  300
DHNAYNQIQA QQPQQQQDES LGQLLLLQQP ATPQQQQQLQ GHGEIDQLIP HHELNQQPHH  360
QGSTSHSHHQ FILQPHHHEH NQQPHQASTS HTHHQFMLHP HHYEHDQQPL HHHEHNQQPH  420
QGSTSHTHHQ FMLHPHHHEH DQQPLHHHEH NQQPHQGSTS HTHHQFLLQP LHHEHNQQPL  480
HIEHNQQPLQ QQLLLLQQQE QSQQQQQQQQ QQQQQRDGSE EGWTIGPPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	4	126	8	131	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	4	126	8	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019105405.1	1e-153	PREDICTED: LOB domain-containing protein 36
TrEMBL	A0A0K9QYP5	9e-73	A0A0K9QYP5_SPIOL; Uncharacterized protein
STRING	XP_010680442.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-63	ASYMMETRIC LEAVES 2-like 1