PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_134560_dzpj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family G2-like
Protein Properties Length: 331aa    MW: 36687.2 Da    PI: 6.5226
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_134560_dzpj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.1e-32197252156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k r++W+peLH+rFv+a+eqLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Bv6_134560_dzpj.t1 197 KRRRCWSPELHRRFVDALEQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 252
                         689***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.396194254IPR017930Myb domain
SuperFamilySSF466891.64E-18194255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-30195255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26197252IPR006447Myb domain, plants
PfamPF002493.9E-8199250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MASDFPILSL DLRPPTSSPA ISSSFSDVLT RILVTGIDNS GELSKLSDFV VGLEDELKKI  60
QAFQRELPLS FLLLNDAISK LKEAVKKDEE KRWDGKFGGH IGVKLGIDHE FEKKTWMSSA  120
QLWSPTSREG NKNEERGVNL SFQEATDDVS GLSLVPPGVV AVEKPGTGGI YSGSVFSTGE  180
NQRDKPEMKS AYQTARKRRR CWSPELHRRF VDALEQLGGS QVATPKQIRE LMQVDGLTND  240
EVKSHLQKYR LHVRKLPAGS KSINTLLSTG VDVSCGDQLE LGCSMDLEHS SSPKGPFHLE  300
RSRKCNSSSG EEDPEEEKSD GQSWKARHYQ V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-14197250154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14197250154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14197250154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14197250154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680444.10.0PREDICTED: myb family transcription factor EFM
TrEMBLA0A0K9R7611e-132A0A0K9R761_SPIOL; Uncharacterized protein
STRINGXP_010680444.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.15e-49G2-like family protein