PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_134740_guat.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 274aa MW: 27717.5 Da PI: 7.7955

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_134740_guat.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	1.9e-37	25	85	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprC stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk k+s Bv6_134740_guat.t1 25 QHEPLPCPRCSSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKTAKRS 85 567899**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	15	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSTEAADRRA VRAQQMGAPL PPVEQHEPLP CPRCSSTNTK FCYYNNYNFS QPRHFCKSCR 60 RYWTHGGTLR DIPVGGGSRK TAKRSRTSSS CATSSTTTTT STSSSSHVSI GPILDPIPIS 120 QAQAQAQAQL FLSLPSSTHM GGGGGGGGGG GFTSLLSGGG GGPAGLLALG GFGLGLGLDD 180 VGFGLGRGVW AFPHHEVGGY VNGGGVNHNH NNNENGVSNA GCGGGGGGGG GDETGVSRSD 240 TWHMESGEVV GFVGADCFSS LPELAISTSA NGLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680466.1	0.0	PREDICTED: dof zinc finger protein DOF3.4
Swissprot	Q9FGD6	4e-44	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	A0A0K9S2U7	8e-81	A0A0K9S2U7_SPIOL; Uncharacterized protein
STRING	XP_010680466.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-34	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]