PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_135680_edzg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WOX
Protein Properties Length: 290aa    MW: 32366.1 Da    PI: 4.8002
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_135680_edzg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34.1e-21108168257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+t+t+ ql++Le+ F + + +ps++++++++++l    +++e++V++WFqNrRa+ k+
  Bv6_135680_edzg.t1 108 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 168
                         89*****************99**************************************97 PP
2Wus_type_Homeobox104.19.5e-34107170265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ar+RWtPtp Q++iLe+++++G+ tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  Bv6_135680_edzg.t1 107 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 170
                         789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.495104169IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-16105173IPR009057Homeodomain-like
SMARTSM003893.6E-14106173IPR001356Homeobox domain
SuperFamilySSF466892.61E-17107169IPR009057Homeodomain-like
CDDcd000861.30E-13108170No hitNo description
PfamPF000466.0E-19108168IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMDPQQIPPP LQTHENGNCN GNGMINNGGI GGNENHNLGI DGVLYVKVMT DEQLEILRTQ  60
IAVYATICEQ LVEMHKAVTA QQDLAGVRLG NFYCDPLITA VGHKITARQR WTPTPVQLQI  120
LERIFDQGTG TPSKQKIKDI TAELSQHGQI SETNVYNWFQ NRRARSKRKQ LNNNAQNGES  180
EVETDVESPQ DKKTKPETFQ SQPNSMMRVE DPCLQNQEIS SSMHTIDSQC GKMDPVFASD  240
GSSKSTQSLS QLAFYESILQ NPRIDDLIGK MEVPGSYNAY QPDEDYSMTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161169RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680605.10.0PREDICTED: WUSCHEL-related homeobox 8
SwissprotQ5QMM34e-91WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A0K9QH841e-161A0A0K9QH84_SPIOL; Uncharacterized protein
STRINGXP_010680605.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-90WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]