PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_136620_pzjj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 234aa    MW: 26989.3 Da    PI: 7.6937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_136620_pzjj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.11.4e-39331593128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          G+rF P d+el++ yL +k++g +l++ + ++evdiy ++P+ L  +   +++k wyf ++r k+y++g+r+nr++++gyWkat  +k++
  Bv6_136620_pzjj.t1  33 LGYRFTPLDQELIHGYLLRKIKGLSLPT-NLMHEVDIYLHNPEYLAvNYEPQGDKIWYFLTPRVKRYKKGSRPNRSAEDGYWKATRVEKTI 122
                         69*************************9.89**************94444568889*********************************** PP

                 NAM  93 lskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                         ++++++++g kktLv+y+g +a++g+kt+W+mhe+r+
  Bv6_136620_pzjj.t1 123 KTNDDQEIGFKKTLVYYRGnNASDGVKTNWIMHEFRI 159
                         *****************9878999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-4325187IPR003441NAC domain
PROSITE profilePS5100543.61531187IPR003441NAC domain
PfamPF023655.7E-2234159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEGNTGKSME ENHAIVVSAE TLRASQTLRR YSLGYRFTPL DQELIHGYLL RKIKGLSLPT  60
NLMHEVDIYL HNPEYLAVNY EPQGDKIWYF LTPRVKRYKK GSRPNRSAED GYWKATRVEK  120
TIKTNDDQEI GFKKTLVYYR GNNASDGVKT NWIMHEFRIN GPSLLGPSLK WKRDMLLDYV  180
LCRIQQKKQK TEPVELDEEG NNSSAEEEGN NSNDDTNANA NADADTKIDI DLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-383419223173NAC domain-containing protein 19
3swm_B5e-383419223173NAC domain-containing protein 19
3swm_C5e-383419223173NAC domain-containing protein 19
3swm_D5e-383419223173NAC domain-containing protein 19
3swp_A5e-383419223173NAC domain-containing protein 19
3swp_B5e-383419223173NAC domain-containing protein 19
3swp_C5e-383419223173NAC domain-containing protein 19
3swp_D5e-383419223173NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680863.11e-175PREDICTED: NAC domain-containing protein 19
TrEMBLB9HNX93e-44B9HNX9_POPTR; Uncharacterized protein
STRINGXP_010680863.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-38NAC domain containing protein 19