PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_138480_uysd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 151aa    MW: 17369 Da    PI: 9.8184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_138480_uysd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43.1e-1938132198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f ++ltps+v  + +  +pk+f++++  k++++ +  l++++g++W v +   +++gr+ lt+GWk F  an+L++gD+ +F+l+++ +f 
  Bv6_138480_uysd.t1  38 FATKLTPSSVEYTFNTGVPKEFVKTYLDKEPRTCKFHLQTSTGKTWPVVM-TAGGDGRVKLTEGWKIFTLANKLQVGDISIFELINKLKF- 126
                         7899**********************77778888****************.5788888*************************9985555. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v+++r
  Bv6_138480_uysd.t1 127 -NVHILR 132
                         .888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-2132132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-2234132IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-2036132No hitNo description
PfamPF023622.5E-1738132IPR003340B3 DNA binding domain
PROSITE profilePS5086313.45138134IPR003340B3 DNA binding domain
SMARTSM010199.3E-1438134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDDKLIISYN RRWPPGLTPE ETKRVRAYYA HNCKHPSFAT KLTPSSVEYT FNTGVPKEFV  60
KTYLDKEPRT CKFHLQTSTG KTWPVVMTAG GDGRVKLTEG WKIFTLANKL QVGDISIFEL  120
INKLKFNVHI LRLANAKENR ENIAINIEEI E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681213.11e-107PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0K9RWT24e-35A0A0K9RWT2_SPIOL; Uncharacterized protein
STRINGXP_010681213.11e-107(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-08B3 family protein