PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_139990_gfdg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 318aa    MW: 34950.5 Da    PI: 5.7218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_139990_gfdg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.19e-153483255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+  E+rRR++iN++f+ Lr+l+P+     ++K + a+ L +++eY++ Lq
  Bv6_139990_gfdg.t1 34 RSKHSVTEQRRRSKINERFQILRDLIPHG----DQKRDTASFLLEVIEYVQLLQ 83
                        889*************************7....79****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-1830104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-2131104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.9173282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-123483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-143487No hitNo description
SMARTSM003531.4E-103888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDDDDDYEED FTSKKEASSA NKDSKNNDKA SAMRSKHSVT EQRRRSKINE RFQILRDLIP  60
HGDQKRDTAS FLLEVIEYVQ LLQEKVQKYE GSYEGWSTEP TKLMPWRHSH WRVQSFLGHP  120
QAVKNGPSPA SSTFAAKFDE RSFSTNPSVT ANTQTPVDVD SGHDAFRALD PQSDLVEKTA  180
PIPAPLLHVP TAVRSDRDDS NLSQRPASDT LAAPCHMSGD HQQGEHIIEG GTVSISSAYS  240
HGLLMTLTQA LQSSGVDLSQ ANISIRIDLG KQANQSLVSG LSGAKELENS ASHDLTMGHV  300
GDGSGMEELE QPQKKLKS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681151.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA42e-95BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0K9RDJ71e-166A0A0K9RDJ7_SPIOL; Uncharacterized protein
STRINGXP_010681151.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-94BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]