PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_140280_ckch.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bZIP

Protein Properties

Length: 169aa MW: 20087.5 Da PI: 6.5159

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_140280_ckch.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45	2.4e-14	76	134	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ rr+ +NRe+ArrsR RKk +i eL v L +eN+aL+++le+ ++ ++ +e+ Bv6_140280_ckch.t1 76 RKHRRMLSNRESARRSRMRKKRQINELWSHVLRLRTENHALIDKLEHVSESHNQVLQEN 134 689**********************************************9999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.5E-11	66	128	No hit	No description
SMART	SM00338	1.4E-13	72	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	74	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-12	76	134	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.78E-11	76	126	No hit	No description
CDD	cd14702	5.92E-14	77	128	No hit	No description
PROSITE pattern	PS00036	0	79	94	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MPIAMNICKI EEDNHKAFSI QNPLFPSNFS LNFDNLTCNQ TFLDVEEINF GAQYLSYISS 60 TSNEAEEQPK NQVDERKHRR MLSNRESARR SRMRKKRQIN ELWSHVLRLR TENHALIDKL 120 EHVSESHNQV LQENIQLKEE TSNLRQMLTY MKLDTNDVLY NALRYVEDN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010681298.2	1e-122	PREDICTED: basic leucine zipper 43
Swissprot	Q9FMC2	4e-33	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0J8C902	1e-121	A0A0J8C902_BETVU; Uncharacterized protein
STRING	XP_010681298.1	1e-122	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	7e-37	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]