PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_140640_cskj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 336aa    MW: 38033.6 Da    PI: 6.1417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_140640_cskj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.2e-11124170455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++ErrRR+ i + f  L +++P       kK++K +iL ++++Y+k+Lq
  Bv6_140640_cskj.t1 124 DHIIAERRRRELISQLFISLSSIVPGI-----KKVDKTSILGETIKYMKQLQ 170
                         699**********************97.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.494120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-15124178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8124170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14124179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.02E-10125174No hitNo description
SMARTSM003533.0E-12126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDVDASLPTS INNSHHQFQE SEIMETYFAE QLSGTLGEDF PYPLPDENYV TCPKFDFDCD  60
LTGQFVFPQT PNNNNNHNYN KDNDKIHNSN VQEDKQRCVI KEKTKNQATS GGAKKKRQPN  120
QVQDHIIAER RRRELISQLF ISLSSIVPGI KKVDKTSILG ETIKYMKQLQ EKVKVLEDAV  180
VKRTIESVVV VKKSQLIVDD DKGGEDDESY SMADNNNGRG IDSHDKGRKD SELNNKDDSL  240
TEIEIKISGK TLLLRVYCEQ RKDILAQLSA EINKHDMNVT NCSVIPFESF ALAVTIVAQM  300
ENGSNKNVKD FLRSLHSVLR LPSHRGHVSS EDNHIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114132KKRQPNQVQDHIIAERRRR
2128133ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681346.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0J8B7C81e-149A0A0J8B7C8_BETVU; Uncharacterized protein
STRINGXP_010681346.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-33bHLH family protein