PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_141380_zdcq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 373aa    MW: 41197.7 Da    PI: 5.9802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_141380_zdcq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14187233354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Bv6_141380_zdcq.t1 187 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 233
                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11187233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14188239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14188242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-13190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-5197236No hitNo description
Gene3DG3DSA:3.30.70.2605.7E-4271323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNSSENNNNI SEEARNQQQQ QQQDLVVVDY QCPQQNNSNI IIQNNNLEMQ QYHQATPTHS  60
DHPFVGNFVG GGRAGLVFPD LSTPPPLQPQ PHMLPWDLSQ AHHSFPQSHH DPFFFPSSSS  120
YGGLFTRRPS NSLQFAYEGS SSDHLRLLSD ALGPMVQPGS APFGLQAELN KMTAQEIMDA  180
KALAASKSHS EAERRRRERI NNHLAKLRSL LPSTTKTDKA SLLAEVIQHV KELRRQTSII  240
AETSVVPTET DELTVDAASD DQDGKFIIKA SLCCDDRSDL LPDLIKALKT LRLKTLKAEI  300
TTLGGRVKNV LFVTHEPNNS DDVDQDDHHE ESPQCSVSSI QEALKAVIEK SGGGDESTSG  360
NPKRQRTANI TIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681418.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y11e-102BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0K9QFP51e-176A0A0K9QFP5_SPIOL; Uncharacterized protein
STRINGXP_010681418.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]