PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_141490_ncmt.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 257aa MW: 29046.5 Da PI: 5.2041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_141490_ncmt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.4e-09	147	194	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+riN+++ L++l+P + k + a +L ++Y++sLq Bv6_141490_ncmt.t1 147 SHSLAERVRRERINEKLKVLQDLVPGC----YKTMGMAVMLDVIINYVRSLQ 194 8*************************8....355888888999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.26E-12	141	198	No hit	No description
SuperFamily	SSF47459	8.64E-17	141	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.497	143	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-16	143	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	147	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-8	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:2000488	Biological Process	positive regulation of brassinosteroid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEEFRNDIQK VLKPTAAFSQ LNSNMELFTS FSELNQPLSS HILDYFSSNN VINNADTNQP 60 PYSNEQLEFT FVEDSAIAHS LLCVSDQTHS TAVQLSSDFG SEAGPNNRID QNNSTTGKKR 120 KRKDEVEVEK PKDVIHVRAK RGQATDSHSL AERVRRERIN EKLKVLQDLV PGCYKTMGMA 180 VMLDVIINYV RSLQNQIEFL SMKLSAASMF YDFNSPEAEA IETLQRTTNP CDAEETERVA 240 KEGYGGMLPK LHSSWPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	122	KKRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010681492.1	0.0	PREDICTED: transcription factor bHLH75
Swissprot	A4D998	1e-56	BH075_ARATH; Transcription factor bHLH75
TrEMBL	A0A0K9QPE7	1e-106	A0A0K9QPE7_SPIOL; Uncharacterized protein
STRING	XP_010681492.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	7e-54	bHLH family protein

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]