PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_141930_jcst.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 487aa    MW: 55136 Da    PI: 8.899
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_141930_jcst.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.7e-17230263134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +Cgtt+Tp+WR gp g kt+CnaCG+ y++ +
  Bv6_141930_jcst.t1 230 CMHCGTTETPQWRTGPMGRKTVCNACGVQYKHGR 263
                         99*****************************976 PP
2GATA49.55.9e-16413446134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C +tkTp+WR+gp g +tLCnaCG+ yr  +
  Bv6_141930_jcst.t1 413 CLHCESTKTPQWREGPMGRYTLCNACGVQYRAGR 446
                         99****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.163224260IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-16224278IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-13225282No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14226264IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.75E-13229278No hitNo description
PfamPF003202.4E-14230263IPR000679Zinc finger, GATA-type
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-12407458No hitNo description
SMARTSM004016.0E-14407461IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.411411443IPR000679Zinc finger, GATA-type
CDDcd002025.74E-12412461No hitNo description
Gene3DG3DSA:3.30.50.101.1E-12412444IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440413438IPR000679Zinc finger, GATA-type
PfamPF003209.5E-14413446IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MTASENKGFA IQGDFSGSSN LAHEIRDDNP RRINQILIGQ GLNLGIVNQY GQLMGEYSRL  60
DDELWLSKPE DEEAVEKCNE GVELASVPFY ENIVGQGQAS EYVDDPVCDV GVSVKEKASS  120
LKHYSQKHYK NSSPISVLQK GWSCSNVSTT VRSHRKRRQP TKRNSSGGFQ FPGTTSSARE  180
HSWAFQSESE NSMESSLSDE TDEYIPAKQV RTRKISELIN FDSNPAAKKC MHCGTTETPQ  240
WRTGPMGRKT VCNACGVQYK HGRLYPDYRP LKSPTFDPSL HSNLPKKVQM MRMGNVSERV  300
PHPTPKPKKV QWIKTGNNIP IGQNLTSELK KLETRMGKNS EMGQNLTSEP ENFDGMCFGN  360
KNERDQNRAH RAKKFEERRE KASDLIQLDC RENQNFDSEV ILKPKTMEVV KKCLHCESTK  420
TPQWREGPMG RYTLCNACGV QYRAGRLYPE YRPLKSPTYD PCLHSHLPKK VLQMRMNNAE  480
NNATSGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681549.10.0PREDICTED: uncharacterized protein LOC104896501
TrEMBLA0A0K9RV051e-175A0A0K9RV05_SPIOL; Uncharacterized protein
STRINGXP_010681549.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-27GATA transcription factor 11