PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_141950_gmyf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family AP2
Protein Properties Length: 677aa    MW: 76121.8 Da    PI: 7.5675
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_141950_gmyf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1267107246
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 
                         +y+GVr++k +g++++eIr+p     +  r++lg+f ta+eA++ +
  Bv6_141950_gmyf.t1  67 KYPGVRRRK-WGKYASEIRHPI----NkVRIWLGTFNTAKEAYEVY 107
                         8*****998.**********72....35**********99999877 PP
2AP227.76.9e-09159200550
                 AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                         GVr  k +g+W A+Ir+p++   +  ++lg+f++aeeA + + +  
  Bv6_141950_gmyf.t1 159 GVRKVK-SGKWGARIRHPKT---SDWIWLGRFDSAEEAVRVYKEKE 200
                         9*9888.7*********954...4**************99998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-567107IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1367114IPR016177DNA-binding domain
CDDcd000185.02E-1567107No hitNo description
SMARTSM003805.0E-1367127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1667108IPR001471AP2/ERF domain
PROSITE profilePS5103216.64767134IPR001471AP2/ERF domain
PRINTSPR003673.2E-66879IPR001471AP2/ERF domain
PRINTSPR003673.2E-690106IPR001471AP2/ERF domain
PROSITE profilePS5103212.655156219IPR001471AP2/ERF domain
CDDcd000181.81E-11159196No hitNo description
SuperFamilySSF541713.07E-9159207IPR016177DNA-binding domain
SMARTSM003804.2E-5159214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-10159205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-4227270IPR001471AP2/ERF domain
PROSITE profilePS510329.545351408IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-6353399IPR016177DNA-binding domain
SMARTSM003800.041354414IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-7354406IPR001471AP2/ERF domain
PROSITE profilePS510329.124487554IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-5489527IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MKKFRVFCTD PDATDSSSCD EDDQIGEKPT KRKRFLREIT LSAAEEAPKE PILHVTPAEE  60
TPGNAVKYPG VRRRKWGKYA SEIRHPINKV RIWLGTFNTA KEAYEVYYMK KLEFDALRNI  120
DKSKSVEVKS DNFANASVEY GKVEGIGEKV DEIVELPDGV RKVKSGKWGA RIRHPKTSDW  180
IWLGRFDSAE EAVRVYKEKE GEFEGRFKNE KEDDVDDFEG RNLGCSVREL GCRRWEARVW  240
HPRLKTRVLV GVYSSRRQAE LAYKKKKVQF QMKFRCNKRF APKCQKVDRS LRPECGSGKM  300
DGCVSDGGGY AGREIVIALP APRLCSEGKA MNSEFVKAVD DENENSGGVE LPAGVRMTKS  360
GRFGALISDP VLGTGHWLGS FKTLEEAGNA VNRKMAEFEE AGNAVNRKMA EFEEGFRLRR  420
RSNPMRKCVE QSRRPKCGCE NTDETCGEVG REVVNGLAAP TRLTSDGKAI SLELFKAVKS  480
EESDRVLPKG VKMTKSGRFG ARVTHPVLGT ELWLGSYFTL EEAVNSLNRK TAEFEKCFES  540
RKRVRPDDEV INSPKKTKYD FYNGSPTSIL DCENENIATM NSELKNEVAD YGVVHGLPSS  600
DVEPGKVNGG HVNALESKAS VTSSENQQEL VLPLSFDDAV RLGIMNQYGQ LLGEYSKYDE  660
PMWLSDHDEG EESTDYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681555.10.0PREDICTED: uncharacterized protein LOC104896504
TrEMBLA0A0K9RMK61e-157A0A0K9RMK6_SPIOL; Uncharacterized protein
STRINGXP_010681552.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-23ERF family protein