PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_142380_juif.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 281aa    MW: 31085.3 Da    PI: 6.4123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_142380_juif.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-1399145354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + hn  Er+RR++i  ++ eL+el+P++     +K +Ka++Le+A +++k L
  Bv6_142380_juif.t2  99 QVHNVSERKRRNKITLKIKELQELMPHC-----RKKDKASVLEEAANHVKAL 145
                         57*************************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.79696145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1099145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-1599158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15100155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-13101150No hitNo description
SMARTSM003531.4E-12102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNEQEEYMDL CEAAFEQVDG LIHESHPGIQ PSYSLLGLPE MSLQPSISYE VELMGDVPEP  60
QDKQKVHGVE LSSTQDEFMG QYCSKDPTAY KLKRIQSAQV HNVSERKRRN KITLKIKELQ  120
ELMPHCRKKD KASVLEEAAN HVKALKLQVE TMTKAREGEF LSRYMPYVGT PIIQFQSPRQ  180
CVPRSAGPST GTGIGMPFGV GICQSCSCAC APYIHLPPGI SNPYSASMMA AYPLFPAVCS  240
TQTVISQSDG NCSSETEPCS EVHEQLGTGN DRKRSATHLK Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681625.10.0PREDICTED: transcription factor APG isoform X1
STRINGXP_010681625.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-18phytochrome interacting factor 3